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Started by upstream project "BIOFORMATS-test-repo" build number 294 originally caused by: Started by upstream project "Trigger" build number 313 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4060954720273199847.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46449_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:15:51,381 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:15:51,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:15:51,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:15:51,383 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:15:51,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:15:51,384 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:15:51,384 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:15:51,384 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:15:51,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:15:51,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:15:51,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:15:51,386 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:15:51,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:15:51,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:15:51,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:15:51,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:15:51,579 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:15:51,579 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:15:51,579 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:15:51,580 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:15:51,580 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:15:51,581 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:15:51,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-18 01:15:51,590] [main] java.version = 17.0.2 [testng] 01:15:51,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:15:51,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:51,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_01-15-51.log] [testng] 01:15:51,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-18 01:15:51,638] [main] testng.directory = /data [testng] [2024-12-18 01:15:51,638] [main] testng.configDirectory = /config [testng] [2024-12-18 01:15:51,647] [main] testng.multiplier = 1.0 [testng] [2024-12-18 01:15:51,648] [main] testng.in-memory = false [testng] [2024-12-18 01:15:51,648] [main] testng.allow-missing = false [testng] [2024-12-18 01:15:51,648] [main] user.language = en [testng] [2024-12-18 01:15:51,648] [main] user.country = ${user.country} [testng] [2024-12-18 01:15:51,648] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-18 01:16:57,286] [main] ---------------------------------------- [testng] [2024-12-18 01:16:57,287] [main] Total files: 259 [testng] [2024-12-18 01:16:57,287] [main] Scan time: 65.638 s (253 ms/file) [testng] [2024-12-18 01:16:57,287] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-18 02:07:18,501] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] 02:07:18,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:18,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:18,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_02-07-18.log] [testng] 02:07:18,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5699d6f5 - End of configuration. [testng] [2024-12-18 02:07:20,536] [pool-1-thread-12] Initializing /data/stefan/yc2_live-03.oib: [testng] 02:07:20,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:20,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:20,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_02-07-20.log] [testng] 02:07:20,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68dfff08 - End of configuration. [testng] [2024-12-18 02:07:22,630] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] 02:07:22,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:22,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:22,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_02-07-22.log] [testng] 02:07:22,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ebc06b4 - End of configuration. [testng] [2024-12-18 02:07:23,805] [pool-1-thread-10] Initializing /data/pedro/plv-test.oib: [testng] 02:07:23,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:23,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:23,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_02-07-23.log] [testng] 02:07:23,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c91519d - End of configuration. [testng] [2024-12-18 02:07:24,656] [pool-1-thread-9] Initializing /data/qa-17748/Image0098.oib: [testng] 02:07:24,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:24,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:24,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_02-07-24.log] [testng] 02:07:24,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8f0cf82 - End of configuration. [testng] [2024-12-18 02:07:25,464] [pool-1-thread-8] Initializing /data/christian/20min.oif: [testng] 02:07:25,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:25,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:25,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_02-07-25.log] [testng] 02:07:25,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c623db9 - End of configuration. [testng] [2024-12-18 02:07:26,651] [pool-1-thread-7] Initializing /data/brian/Kaede15.oib: [testng] 02:07:26,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:26,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:26,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_02-07-26.log] [testng] 02:07:26,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e61c4b - End of configuration. [testng] [2024-12-18 02:07:28,235] [pool-1-thread-6] Initializing /data/simon/never_worked.oib: [testng] 02:07:28,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:28,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:28,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_02-07-28.log] [testng] 02:07:28,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6bbd77 - End of configuration. [testng] [2024-12-18 02:07:29,745] [pool-1-thread-5] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] 02:07:29,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:29,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:29,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_02-07-29.log] [testng] 02:07:29,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f0a77d9 - End of configuration. [testng] [2024-12-18 02:07:31,352] [pool-1-thread-4] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] 02:07:31,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:31,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:31,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_02-07-31.log] [testng] 02:07:31,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49ef249 - End of configuration. [testng] [2024-12-18 02:07:47,004] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] 02:07:47,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:47,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_02-07-47.log] [testng] 02:07:47,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68ce7cc1 - End of configuration. [testng] [2024-12-18 02:07:48,105] [pool-1-thread-2] Initializing /data/glen/Image0002.oif: [testng] 02:07:48,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:48,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:48,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_02-07-48.log] [testng] 02:07:48,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5210357d - End of configuration. [testng] [2024-12-18 02:08:07,555] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-12-18 02:08:09,864] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-12-18 02:08:11,731] [pool-1-thread-5] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-12-18 02:08:22,932] [pool-1-thread-10] Initializing /data/aryeh/control_test.oib: [testng] [2024-12-18 02:08:28,596] [pool-1-thread-6] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-12-18 02:08:43,596] [pool-1-thread-3] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-12-18 02:08:46,937] [pool-1-thread-7] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-12-18 02:09:23,236] [pool-1-thread-1] Initializing /data/molly/11OCT2.OIF: [testng] [2024-12-18 02:11:23,940] [pool-1-thread-12] Initializing /data/johannes/step4.bmp: [testng] [2024-12-18 02:11:29,522] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-12-18 02:11:35,524] [pool-1-thread-9] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-12-18 02:11:42,677] [pool-1-thread-3] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-12-18 02:11:56,864] [pool-1-thread-11] Initializing /data/glen/notsaturated.oib: [testng] [2024-12-18 02:12:03,696] [pool-1-thread-12] Initializing /data/glen/111407.oif: [testng] [2024-12-18 02:12:32,389] [pool-1-thread-8] Initializing /data/glen/singlesimul.oif: [testng] [2024-12-18 02:12:39,172] [pool-1-thread-11] Initializing /data/brian/lambda02nm.oib: [testng] [2024-12-18 02:12:41,457] [pool-1-thread-10] Initializing /data/yoshihito/XY.oib: [testng] [2024-12-18 02:13:02,493] [pool-1-thread-9] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-12-18 02:13:06,790] [pool-1-thread-11] Initializing /data/glen/simulstack.oif: [testng] [2024-12-18 02:13:25,709] [pool-1-thread-10] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-12-18 02:13:46,979] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-12-18 02:13:54,537] [pool-1-thread-10] Initializing /data/molly/11OCT7.OIF: [testng] [2024-12-18 02:17:24,325] [pool-1-thread-9] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-12-18 02:19:01,437] [pool-1-thread-8] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-12-18 02:19:29,041] [pool-1-thread-8] Initializing /data/yoshihito/XY.oif: [testng] [2024-12-18 02:19:48,085] [pool-1-thread-9] Initializing /data/molly/11OCT5.OIF: [testng] [2024-12-18 02:22:32,291] [pool-1-thread-8] Initializing /data/simon/used_to_work.oib: [testng] [2024-12-18 02:22:56,997] [pool-1-thread-8] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-12-18 02:23:23,712] [pool-1-thread-8] Initializing /data/molly/11OCT9.OIF: [testng] [2024-12-18 02:48:07,069] [pool-1-thread-7] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-12-18 02:48:16,785] [pool-1-thread-7] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-12-18 02:48:25,424] [pool-1-thread-7] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-12-18 02:48:34,648] [pool-1-thread-7] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-12-18 02:48:44,525] [pool-1-thread-7] Initializing /data/yasunori/series_1.oib: [testng] [2024-12-18 02:49:12,980] [pool-1-thread-7] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-12-18 02:49:27,224] [pool-1-thread-7] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-12-18 02:49:45,311] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-12-18 02:49:58,658] [pool-1-thread-7] Initializing /data/molly/11OCT11.OIF: [testng] [2024-12-18 02:51:56,645] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oib: [testng] [2024-12-18 02:52:06,968] [pool-1-thread-3] Initializing /data/michael/CELL3.oib: [testng] [2024-12-18 02:52:19,459] [pool-1-thread-3] Initializing /data/molly/11OCT3.OIF: [testng] [2024-12-18 02:57:46,820] [pool-1-thread-5] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-12-18 02:59:55,267] [pool-1-thread-5] Initializing /data/chris/missegragation-15.oib: [testng] [2024-12-18 03:00:10,570] [pool-1-thread-5] Initializing /data/glen/simulstack.oib: [testng] [2024-12-18 03:00:23,615] [pool-1-thread-5] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-12-18 03:00:51,282] [pool-1-thread-5] Initializing /data/aryeh/1h.oib: [testng] [2024-12-18 03:01:13,959] [pool-1-thread-5] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-12-18 03:01:54,792] [pool-1-thread-5] Initializing /data/glen/singleseqline.oib: [testng] [2024-12-18 03:02:16,798] [pool-1-thread-5] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-12-18 03:05:33,155] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-12-18 03:05:41,373] [pool-1-thread-6] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-12-18 03:05:44,820] [pool-1-thread-12] Initializing /data/jae/Image0001.oib: [testng] [2024-12-18 03:05:57,790] [pool-1-thread-12] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-12-18 03:06:29,389] [pool-1-thread-11] Initializing /data/johannes/step1.bmp: [testng] [2024-12-18 03:06:37,312] [pool-1-thread-11] Initializing /data/molly/11OCT4.OIF: [testng] [2024-12-18 03:09:07,390] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-12-18 03:09:12,098] [pool-1-thread-12] Initializing /data/brian/FLIP.oib: [testng] [2024-12-18 03:09:28,170] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-12-18 03:09:42,002] [pool-1-thread-2] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-12-18 03:10:24,001] [pool-1-thread-12] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-12-18 03:10:55,380] [pool-1-thread-12] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-12-18 03:11:28,144] [pool-1-thread-12] Initializing /data/david/Image0016.oib: [testng] [2024-12-18 03:12:04,531] [pool-1-thread-12] Initializing /data/stefan/cytosol_01a.oif: [testng] 03:38:28,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:38:28,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:38:28,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_03-38-28.log] [testng] 03:38:28,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d2eb774 - End of configuration. [testng] 04:01:37,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:01:37,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:01:37,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_04-01-37.log] [testng] 04:01:37,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@596d7c - End of configuration. [testng] [2024-12-18 04:21:38,459] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-12-18 04:23:54,474] [pool-1-thread-6] Initializing /data/marc/V0606L.oib: [testng] [2024-12-18 04:28:39,342] [pool-1-thread-6] Initializing /data/glen/singleseqline.oif: [testng] [2024-12-18 04:49:58,400] [pool-1-thread-6] Initializing /data/glen/singleseqframe.oib: [testng] [2024-12-18 04:50:36,117] [pool-1-thread-6] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-12-18 04:51:15,720] [pool-1-thread-6] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-12-18 05:00:05,425] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-12-18 05:00:48,932] [pool-1-thread-10] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-12-18 05:01:27,678] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-12-18 05:02:17,426] [pool-1-thread-10] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-12-18 05:03:04,106] [pool-1-thread-10] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-12-18 05:04:02,721] [pool-1-thread-10] Initializing /data/glen/notsaturated.oif: [testng] [2024-12-18 05:36:51,796] [pool-1-thread-9] Initializing /data/johannes/step3.bmp: [testng] [2024-12-18 05:38:36,443] [pool-1-thread-9] Initializing /data/molly/11OCT6.OIF: [testng] 06:18:18,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:18:18,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:18:18,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_06-18-18.log] [testng] 06:18:18,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bf4c2e3 - End of configuration. [testng] [2024-12-18 06:18:51,648] [pool-1-thread-6] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-12-18 06:19:18,394] [pool-1-thread-6] Initializing /data/glen/singlesimul.oib: [testng] [2024-12-18 06:20:15,687] [pool-1-thread-6] Initializing /data/sten/01.oib: [testng] [2024-12-18 06:20:47,879] [pool-1-thread-6] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-12-18 06:21:03,958] [pool-1-thread-6] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-12-18 06:24:27,194] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-12-18 06:24:44,272] [pool-1-thread-6] Initializing /data/brian/PA-GFP-3.oib: [testng] 06:25:00,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:25:00,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:25:00,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_06-25-00.log] [testng] 06:25:00,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b1fd31e - End of configuration. [testng] [2024-12-18 06:25:00,894] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2024-12-18 06:29:44,667] [pool-1-thread-4] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-12-18 06:29:55,666] [pool-1-thread-4] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-12-18 06:30:11,328] [pool-1-thread-4] Initializing /data/glen/Null file/test change.oif: [testng] [2024-12-18 06:31:37,284] [pool-1-thread-5] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-12-18 06:31:38,768] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-12-18 06:31:45,116] [pool-1-thread-5] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-12-18 06:31:56,516] [pool-1-thread-4] Initializing /data/david/Image0016.oif: [testng] [2024-12-18 06:33:36,559] [pool-1-thread-10] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-12-18 06:33:46,010] [pool-1-thread-10] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-12-18 06:33:58,528] [pool-1-thread-10] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-12-18 06:34:11,949] [pool-1-thread-10] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-12-18 06:34:23,699] [pool-1-thread-10] Initializing /data/karl/Image0009.oib: [testng] [2024-12-18 06:34:40,662] [pool-1-thread-10] Initializing /data/kay/IM2pg.oib: [testng] [2024-12-18 06:34:52,190] [pool-1-thread-4] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-12-18 06:35:00,423] [pool-1-thread-10] Initializing /data/tom/RGB-1.avi: [testng] [2024-12-18 06:35:08,158] [pool-1-thread-4] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-12-18 06:35:09,882] [pool-1-thread-10] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-12-18 06:35:18,792] [pool-1-thread-4] Initializing /data/molly/11OCT10.OIF: [testng] 06:38:47,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:38:47,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:38:47,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_06-38-47.log] [testng] 06:38:47,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ddacbc1 - End of configuration. [testng] 06:43:00,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:43:00,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:43:00,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_06-43-00.log] [testng] 06:43:00,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4274f2b - End of configuration. [testng] [2024-12-18 06:43:22,433] [pool-1-thread-10] Initializing /data/glen/seqlinestack.oif: [testng] 06:44:40,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:44:40,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:44:40,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_06-44-40.log] [testng] 06:44:40,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74780ab8 - End of configuration. [testng] [2024-12-18 06:45:11,009] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oif: [testng] [2024-12-18 06:47:05,910] [pool-1-thread-7] Initializing /data/johannes/step5b.bmp: [testng] [2024-12-18 06:47:14,013] [pool-1-thread-7] Initializing /data/tom/zseries-test.oib: [testng] [2024-12-18 06:47:35,306] [pool-1-thread-11] Initializing /data/monica/Image0056.oif: [testng] [2024-12-18 06:47:39,955] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-12-18 06:48:00,680] [pool-1-thread-7] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-12-18 06:48:22,819] [pool-1-thread-7] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-12-18 06:49:40,367] [pool-1-thread-11] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-12-18 06:49:48,971] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-12-18 06:49:58,180] [pool-1-thread-11] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-12-18 06:50:06,813] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-12-18 06:50:16,685] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] [2024-12-18 06:50:20,388] [pool-1-thread-11] Initializing /data/marc/V0606J.oib: [testng] [2024-12-18 06:50:42,227] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-12-18 06:50:50,202] [pool-1-thread-11] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 06:51:51,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:51:51,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:51:51,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_06-51-51.log] [testng] 06:51:51,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ecb7f4 - End of configuration. [testng] [2024-12-18 06:55:26,888] [pool-1-thread-1] Initializing /data/allan/62909#1.oib: [testng] [2024-12-18 06:55:41,762] [pool-1-thread-1] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-12-18 06:56:00,696] [pool-1-thread-1] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-12-18 06:58:19,470] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-12-18 06:58:41,141] [pool-1-thread-1] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-12-18 07:00:31,819] [pool-1-thread-1] Initializing /data/johannes/step4b.bmp: [testng] [2024-12-18 07:00:32,184] [pool-1-thread-7] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-12-18 07:00:38,409] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-12-18 07:00:49,891] [pool-1-thread-7] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-12-18 07:05:26,444] [pool-1-thread-1] Initializing /data/molly/11OCT8.OIF: [testng] [2024-12-18 07:10:21,822] [pool-1-thread-11] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-12-18 07:11:20,205] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-12-18 07:12:11,009] [pool-1-thread-11] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] 07:22:50,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:22:50,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:22:50,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_07-22-50.log] [testng] 07:22:50,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b3fe648 - End of configuration. [testng] 09:37:33,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:37:33,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:33,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_09-37-33.log] [testng] 09:37:33,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64201fac - End of configuration. [testng] 09:38:15,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:38:15,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:15,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_09-38-15.log] [testng] 09:38:15,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70dddbdf - End of configuration. [testng] 10:33:02,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:33:02,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:33:02,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_10-33-02.log] [testng] 10:33:02,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560ca06d - End of configuration. [testng] 10:59:03,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:59:03,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:03,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_10-59-03.log] [testng] 10:59:03,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c353873 - End of configuration. [testng] 11:08:02,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:08:02,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:08:02,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_11-08-02.log] [testng] 11:08:02,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bb1fd94 - End of configuration. [testng] 11:23:12,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:23:12,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:23:12,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_11-23-12.log] [testng] 11:23:12,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55024328 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 607 minutes 23 seconds Finished: SUCCESS