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Started by upstream project "BIOFORMATS-test-repo" build number 294 originally caused by: Started by upstream project "Trigger" build number 313 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins10599737071310126243.sh + '[' pict = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46458_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:18:16,220 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:18:16,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:18:16,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:16,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:16,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:18:16,223 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:18:16,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:18:16,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:16,224 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:16,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:18:16,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:18:16,225 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:18:16,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:18:16,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:18:16,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:18:16,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:18:16,410 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:18:16,410 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:18:16,411 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:18:16,411 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:18:16,411 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:18:16,412 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:18:16,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-18 02:18:16,420] [main] java.version = 17.0.2 [testng] 02:18:16,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:18:16,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_02-18-16.log] [testng] 02:18:16,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-18 02:18:16,466] [main] testng.directory = /data [testng] [2024-12-18 02:18:16,466] [main] testng.configDirectory = /config [testng] [2024-12-18 02:18:16,474] [main] testng.multiplier = 1.0 [testng] [2024-12-18 02:18:16,475] [main] testng.in-memory = false [testng] [2024-12-18 02:18:16,475] [main] testng.allow-missing = false [testng] [2024-12-18 02:18:16,475] [main] user.language = en [testng] [2024-12-18 02:18:16,475] [main] user.country = ${user.country} [testng] [2024-12-18 02:18:16,475] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-18 02:18:19,639] [main] ---------------------------------------- [testng] [2024-12-18 02:18:19,640] [main] Total files: 25 [testng] [2024-12-18 02:18:19,640] [main] Scan time: 3.164 s (126 ms/file) [testng] [2024-12-18 02:18:19,640] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-18 02:19:05,703] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] 02:19:05,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:19:05,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:05,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_02-19-05.log] [testng] 02:19:05,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@242905c5 - End of configuration. [testng] [2024-12-18 02:19:06,620] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] 02:19:06,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:19:06,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:06,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_02-19-06.log] [testng] 02:19:06,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ac7ccde - End of configuration. [testng] [2024-12-18 02:19:08,360] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT: [testng] 02:19:08,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:19:08,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:08,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_02-19-08.log] [testng] 02:19:08,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d19ce0d - End of configuration. [testng] [2024-12-18 02:19:10,242] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 02:19:10,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:19:10,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:10,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_02-19-10.log] [testng] 02:19:10,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b6ce14c - End of configuration. [testng] [2024-12-18 02:19:11,752] [pool-1-thread-9] Initializing /data/jqd/sixteenBit.pict: [testng] 02:19:11,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:19:11,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:11,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_02-19-11.log] [testng] 02:19:11,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d9ba72 - End of configuration. [testng] [2024-12-18 02:19:13,300] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] 02:19:13,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:19:13,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:13,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_02-19-13.log] [testng] 02:19:13,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15deb839 - End of configuration. [testng] [2024-12-18 02:19:14,788] [pool-1-thread-7] Initializing /data/jqd/32bit.pict: [testng] 02:19:14,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:19:14,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:14,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_02-19-14.log] [testng] 02:19:14,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd2ebf0 - End of configuration. [testng] [2024-12-18 02:19:16,812] [pool-1-thread-6] Initializing /data/brian/images/VENUS.pct: [testng] 02:19:16,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:19:16,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:16,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_02-19-16.log] [testng] 02:19:16,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b8db84 - End of configuration. [testng] [2024-12-18 02:19:18,120] [pool-1-thread-5] Initializing /data/jqd/mireSixteen.pict: [testng] 02:19:18,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:19:18,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:18,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_02-19-18.log] [testng] 02:19:18,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ba4306b - End of configuration. [testng] [2024-12-18 02:19:19,808] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT: [testng] 02:19:19,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:19:19,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:19,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_02-19-19.log] [testng] 02:19:19,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12af3fe6 - End of configuration. [testng] [2024-12-18 02:19:22,815] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 02:19:22,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:19:22,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:22,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_02-19-22.log] [testng] 02:19:22,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c938ac8 - End of configuration. [testng] [2024-12-18 02:19:24,282] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 02:19:24,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:19:24,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:24,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_02-19-24.log] [testng] 02:19:24,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@319169cb - End of configuration. [testng] [2024-12-18 02:19:36,877] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-12-18 02:19:37,904] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] [2024-12-18 02:19:40,202] [pool-1-thread-5] Initializing /data/jqd/mire32.pict: [testng] [2024-12-18 02:19:41,942] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-12-18 02:19:42,900] [pool-1-thread-12] Initializing /data/brian/images/RED.PCT: [testng] [2024-12-18 02:19:44,521] [pool-1-thread-6] Initializing /data/brian/images/BLK.PCT: [testng] [2024-12-18 02:19:46,546] [pool-1-thread-11] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-12-18 02:19:47,426] [pool-1-thread-4] Initializing /data/brian/images/GRN.PCT: [testng] [2024-12-18 02:19:48,504] [pool-1-thread-7] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-12-18 02:19:49,593] [pool-1-thread-8] Initializing /data/misc/planet.pict: [testng] [2024-12-18 02:19:51,026] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: [testng] [2024-12-18 02:19:52,877] [pool-1-thread-3] Initializing /data/misc/planet.png: [testng] [2024-12-18 02:20:01,324] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 10 seconds Finished: SUCCESS