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Started by upstream project "BIOFORMATS-test-repo" build number 294
originally caused by:
 Started by upstream project "Trigger" build number 313
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins14154945759619843533.sh
+ '[' tillvision = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46481_merge_ci -v /uod/idr/repos/curated/tillvision:/data -v /uod/idr-scratch/merge-ci/curated/tillvision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 06:31:27,232 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 06:31:27,234 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 06:31:27,234 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:31:27,234 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:31:27,235 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 06:31:27,235 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 06:31:27,235 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 06:31:27,235 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:31:27,236 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:31:27,236 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 06:31:27,237 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 06:31:27,237 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 06:31:27,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 06:31:27,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 06:31:27,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 06:31:27,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 06:31:27,422 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 06:31:27,422 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 06:31:27,422 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 06:31:27,423 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 06:31:27,423 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 06:31:27,424 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 06:31:27,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-18 06:31:27,432] [main] java.version = 17.0.2
   [testng] 06:31:27,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 06:31:27,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:27,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_06-31-27.log]
   [testng] 06:31:27,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-12-18 06:31:27,478] [main] testng.directory = /data
   [testng] [2024-12-18 06:31:27,478] [main] testng.configDirectory = /config
   [testng] [2024-12-18 06:31:27,486] [main] testng.multiplier = 1.0
   [testng] [2024-12-18 06:31:27,487] [main] testng.in-memory = false
   [testng] [2024-12-18 06:31:27,487] [main] testng.allow-missing = false
   [testng] [2024-12-18 06:31:27,487] [main] user.language = en
   [testng] [2024-12-18 06:31:27,487] [main] user.country = ${user.country}
   [testng] [2024-12-18 06:31:27,488] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-18 06:31:59,157] [main] ----------------------------------------
   [testng] [2024-12-18 06:31:59,158] [main] Total files: 46
   [testng] [2024-12-18 06:31:59,158] [main] Scan time: 31.669 s (688 ms/file)
   [testng] [2024-12-18 06:31:59,158] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 25 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-18 06:33:32,607] [pool-1-thread-1] Initializing /data/venu/060310/1_ drug addition actual test_ glass_Wrkspc6.vws: 
   [testng] 06:33:32,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 06:33:32,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:33:32,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_06-33-32.log]
   [testng] 06:33:32,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bd402bc - End of configuration.
   [testng] [2024-12-18 06:33:35,577] [pool-1-thread-12] Initializing /data/venu/060310/drug addition _BAM.vws: 
   [testng] 06:33:35,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 06:33:35,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:33:35,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_06-33-35.log]
   [testng] 06:33:35,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbcfc18 - End of configuration.
   [testng] [2024-12-18 06:33:37,434] [pool-1-thread-11] Initializing /data/stephan/two sequences.vws: 
   [testng] 06:33:37,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 06:33:37,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:33:37,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_06-33-37.log]
   [testng] 06:33:37,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bc692d4 - End of configuration.
   [testng] [2024-12-18 06:33:38,531] [pool-1-thread-10] Initializing /data/andreas/090811E1.vws: 
   [testng] 06:33:38,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 06:33:38,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:33:38,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_06-33-38.log]
   [testng] 06:33:38,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d463720 - End of configuration.
   [testng] [2024-12-18 06:33:50,260] [pool-1-thread-9] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated BAM_Wrkspc1.vws: 
   [testng] 06:33:50,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 06:33:50,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:33:50,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_06-33-50.log]
   [testng] 06:33:50,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eb25e95 - End of configuration.
   [testng] [2024-12-18 06:33:52,482] [pool-1-thread-8] Initializing /data/ian/working_tillvision_vws/20120322.vws: 
   [testng] 06:33:52,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 06:33:52,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:33:52,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_06-33-52.log]
   [testng] 06:33:52,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57b36ea0 - End of configuration.
   [testng] [2024-12-18 06:33:57,257] [pool-1-thread-7] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc1.vws: 
   [testng] 06:33:57,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 06:33:57,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:33:57,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_06-33-57.log]
   [testng] 06:33:57,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2408ca60 - End of configuration.
   [testng] [2024-12-18 06:33:58,469] [pool-1-thread-6] Initializing /data/gerhard/test.vws: 
   [testng] 06:33:58,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 06:33:58,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:33:58,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_06-33-58.log]
   [testng] 06:33:58,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f3a56b - End of configuration.
   [testng] [2024-12-18 06:33:59,784] [pool-1-thread-5] Initializing /data/venu/060310/1_glass bottom dish_fluorescence snapshot.tif: 
   [testng] 06:33:59,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 06:33:59,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:33:59,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_06-33-59.log]
   [testng] 06:33:59,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@362cfee2 - End of configuration.
   [testng] [2024-12-18 06:34:05,282] [pool-1-thread-4] Initializing /data/imagesc-84715/working.vws: 
   [testng] 06:34:05,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 06:34:05,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:34:05,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_06-34-05.log]
   [testng] 06:34:05,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d2ea91 - End of configuration.
   [testng] [2024-12-18 06:34:07,648] [pool-1-thread-3] Initializing /data/venu/060310/Visible parts of Fluorescence 380nm1_test1.tif: 
   [testng] 06:34:07,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 06:34:07,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:34:07,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_06-34-07.log]
   [testng] 06:34:07,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@506be020 - End of configuration.
   [testng] [2024-12-18 06:34:11,602] [pool-1-thread-2] Initializing /data/venu/060310/Fluorescence 340nm1_test 1.tif: 
   [testng] 06:34:11,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 06:34:11,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:34:11,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_06-34-11.log]
   [testng] 06:34:11,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34cafbb9 - End of configuration.
   [testng] [2024-12-18 06:34:33,102] [pool-1-thread-6] Initializing /data/venu/060310/drug addition protocol testing_Wrkspc3.vws: 
   [testng] [2024-12-18 06:34:41,970] [pool-1-thread-3] Initializing /data/venu/061410/Rat LD muscle fibers Wrkspc3.vws: 
   [testng] [2024-12-18 06:34:43,637] [pool-1-thread-5] Initializing /data/christian/080807ionophore/080807ionophore3.vws: 
   [testng] [2024-12-18 06:34:44,793] [pool-1-thread-2] Initializing /data/christian/080807epi/080807epi2.vws: 
   [testng] [2024-12-18 06:35:34,929] [pool-1-thread-1] Initializing /data/imagesc-84715/not working.vws: 
   [testng] [2024-12-18 06:35:36,077] [pool-1-thread-5] Initializing /data/venu/060310/1_glass bottom dish snapshot.tif: 
   [testng] [2024-12-18 06:35:41,488] [pool-1-thread-7] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc2.vws: 
   [testng] [2024-12-18 06:35:51,283] [pool-1-thread-9] Initializing /data/andreas/090812E4.vws: 
   [testng] [2024-12-18 06:35:55,719] [pool-1-thread-2] Initializing /data/venu/060310/060310_glass_Wrkspc1.vws: 
   [testng] [2024-12-18 06:35:58,773] [pool-1-thread-12] Initializing /data/qinghai/TillvisIOn Sample Dataset/Bgr.vws: 
   [testng] [2024-12-18 06:36:01,174] [pool-1-thread-4] Initializing /data/oliver/TillVision-Data-2-from-Oliver-Mueller-Homburg-Germany/2006 DG2 V1 Indo-1 Ratte.vws: 
   [testng] [2024-12-18 06:36:32,935] [pool-1-thread-11] Initializing /data/samples/fibre.vws: 
   [testng] [2024-12-18 06:36:42,988] [pool-1-thread-5] Initializing /data/ian/non_working_tillvision_vws/20120404.vws: 
   [testng] 07:48:39,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 07:48:39,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:48:39,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_07-48-39.log]
   [testng] 07:48:39,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9fc9f91 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1325, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 77 minutes 17 seconds
Finished: SUCCESS