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Started by upstream project "BIOFORMATS-test-repo" build number 34 originally caused by: Started by upstream project "Trigger" build number 38 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins18053991695134822398.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_4649_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:59:02,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:59:02,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:59:02,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:02,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:02,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:59:02,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:59:02,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:59:02,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:02,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:02,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:59:02,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:59:02,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:59:02,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:59:02,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:59:02,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:59:02,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:59:02,606 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:59:02,606 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:59:02,606 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:59:02,607 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:59:02,607 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:59:02,608 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:59:02,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 320 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-15 01:59:02,619] [main] java.version = 1.8.0_342 [testng] 01:59:02,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:59:02,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:02,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_01-59-02.log] [testng] 01:59:02,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-15 01:59:02,682] [main] testng.directory = /data [testng] [2024-04-15 01:59:02,683] [main] testng.configDirectory = /config [testng] [2024-04-15 01:59:02,698] [main] testng.multiplier = 1.0 [testng] [2024-04-15 01:59:02,699] [main] testng.in-memory = false [testng] [2024-04-15 01:59:02,699] [main] testng.allow-missing = false [testng] [2024-04-15 01:59:02,699] [main] user.language = fr [testng] [2024-04-15 01:59:02,699] [main] user.country = FR [testng] [2024-04-15 01:59:02,699] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-15 02:05:29,735] [main] ---------------------------------------- [testng] [2024-04-15 02:05:29,736] [main] Total files: 7329 [testng] [2024-04-15 02:05:29,736] [main] Scan time: 387.036 s (52 ms/file) [testng] [2024-04-15 02:05:29,736] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-15 02:08:41,424] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 02:08:41,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:08:41,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_02-08-41.log] [testng] 02:08:41,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3198e654 - End of configuration. [testng] [2024-04-15 02:08:41,477] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 02:08:41,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:08:41,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-15_02-08-41.log] [testng] 02:08:41,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a7fec7a - End of configuration. [testng] [2024-04-15 02:08:41,518] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 02:08:41,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:08:41,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-15_02-08-41.log] [testng] 02:08:41,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ddd9e50 - End of configuration. [testng] [2024-04-15 02:08:41,546] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 02:08:41,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:08:41,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-15_02-08-41.log] [testng] 02:08:41,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10378eb3 - End of configuration. [testng] [2024-04-15 02:08:41,607] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:08:41,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:08:41,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-15_02-08-41.log] [testng] 02:08:41,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a2ce158 - End of configuration. [testng] [2024-04-15 02:08:41,663] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 02:08:41,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:08:41,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_02-08-41.log] [testng] 02:08:41,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@290ea946 - End of configuration. [testng] [2024-04-15 02:08:41,684] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 02:08:41,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:08:41,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_02-08-41.log] [testng] 02:08:41,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee08f01 - End of configuration. [testng] [2024-04-15 02:08:41,766] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:08:41,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:08:41,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_02-08-41.log] [testng] 02:08:41,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39f166ac - End of configuration. [testng] [2024-04-15 02:08:41,878] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 02:08:41,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:08:41,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_02-08-41.log] [testng] 02:08:41,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74122329 - End of configuration. [testng] [2024-04-15 02:08:41,949] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 02:08:41,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:08:41,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_02-08-41.log] [testng] 02:08:41,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b8f48bc - End of configuration. [testng] [2024-04-15 02:08:41,989] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 02:08:41,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:08:41,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:41,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_02-08-41.log] [testng] 02:08:41,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@343d0ea - End of configuration. [testng] [2024-04-15 02:08:42,586] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 02:08:42,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:08:42,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:42,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_02-08-42.log] [testng] 02:08:42,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d94adf8 - End of configuration. [testng] [2024-04-15 02:08:44,728] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-04-15 02:08:46,772] [pool-1-thread-8] Initializing /data/josh/2101to600astk.stk: [testng] [2024-04-15 02:08:55,237] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-04-15 02:08:55,286] [pool-1-thread-10] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-04-15 02:08:55,376] [pool-1-thread-11] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-04-15 02:08:55,469] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-04-15 02:08:55,542] [pool-1-thread-5] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-04-15 02:08:55,650] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-15 02:08:55,731] [pool-1-thread-9] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-04-15 02:08:56,040] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-04-15 02:08:56,726] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-04-15 02:08:56,778] [pool-1-thread-12] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-04-15 02:08:57,919] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-04-15 02:08:57,953] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-04-15 02:08:58,175] [pool-1-thread-9] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-04-15 02:08:58,242] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-04-15 02:08:58,383] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-04-15 02:08:58,639] [pool-1-thread-7] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-04-15 02:08:58,696] [pool-1-thread-4] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-04-15 02:08:58,774] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-04-15 02:08:58,839] [pool-1-thread-5] Initializing /data/steve/Experiment2.stk: [testng] [2024-04-15 02:08:58,988] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-04-15 02:08:59,048] [pool-1-thread-3] Used files list does not include base file [testng] [2024-04-15 02:08:59,049] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-04-15 02:08:59,621] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-15 02:08:59,644] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-15 02:08:59,665] [pool-1-thread-10] Initializing /data/cumol-test-series/23.001: [testng] [2024-04-15 02:08:59,739] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-04-15 02:08:59,875] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-15 02:08:59,926] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-04-15 02:08:59,980] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-15 02:09:00,186] [pool-1-thread-2] Initializing /data/thomas/test.tif: [testng] [2024-04-15 02:09:00,257] [pool-1-thread-5] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-04-15 02:09:00,693] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-04-15 02:09:00,778] [pool-1-thread-9] Used files list does not include base file [testng] [2024-04-15 02:09:01,103] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2024-04-15 02:09:01,480] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-15 02:09:01,637] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-15 02:09:01,882] [pool-1-thread-10] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-04-15 02:09:02,133] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-15 02:09:02,154] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-15 02:09:02,404] [pool-1-thread-5] Initializing /data/josh/2101to400astk.stk: [testng] [2024-04-15 02:09:03,966] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-04-15 02:09:04,009] [pool-1-thread-3] Used files list does not include base file [testng] [2024-04-15 02:09:04,010] [pool-1-thread-4] Initializing /data/ascb/mt aim.tif: [testng] [2024-04-15 02:09:04,160] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-04-15 02:09:04,598] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2024-04-15 02:09:04,905] [pool-1-thread-6] Initializing /data/samples/zserSixteen.stk: [testng] [2024-04-15 02:09:04,972] [pool-1-thread-11] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-15 02:09:05,036] [pool-1-thread-4] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-04-15 02:09:05,712] [pool-1-thread-6] Initializing /data/josh/2101to600f.stk: [testng] [2024-04-15 02:09:08,803] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-15 02:09:08,909] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-04-15 02:09:09,574] [pool-1-thread-3] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-04-15 02:09:10,294] [pool-1-thread-11] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-04-15 02:09:10,745] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-15 02:09:11,049] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-04-15 02:09:11,259] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-04-15 02:09:11,946] [pool-1-thread-3] Initializing /data/dave/Z Series.stk: [testng] [2024-04-15 02:09:12,286] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-15 02:09:12,407] [pool-1-thread-9] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-04-15 02:09:13,258] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-04-15 02:09:13,352] [pool-1-thread-7] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-04-15 02:09:14,412] [pool-1-thread-3] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-04-15 02:09:14,551] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-04-15 02:09:14,697] [pool-1-thread-11] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-04-15 02:09:14,844] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-04-15 02:09:15,993] [pool-1-thread-11] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-04-15 02:09:18,791] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-15 02:09:18,812] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-15 02:09:18,915] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-15 02:09:18,968] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-15 02:09:19,277] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-15 02:09:19,914] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-04-15 02:09:19,998] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-15 02:09:20,007] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-04-15 02:09:20,476] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-04-15 02:09:20,607] [pool-1-thread-1] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-04-15 02:09:21,048] [pool-1-thread-9] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-04-15 02:09:21,178] [pool-1-thread-2] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-04-15 02:09:21,403] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-04-15 02:09:23,969] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-15 02:09:24,962] [pool-1-thread-9] Initializing /data/josh/2101to600e.stk: [testng] [2024-04-15 02:09:25,505] [pool-1-thread-7] Initializing /data/samples/zseries.stk: [testng] [2024-04-15 02:09:26,473] [pool-1-thread-12] Initializing 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[pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-04-15 02:09:30,901] [pool-1-thread-6] Initializing /data/qa-16915/m-01.tif: [testng] [2024-04-15 02:09:31,221] [pool-1-thread-1] Initializing /data/alex/Selected FITC.stk: [testng] [2024-04-15 02:09:31,279] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-04-15 02:09:32,129] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-04-15 02:09:32,584] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-04-15 02:09:32,641] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-15 02:09:33,108] [pool-1-thread-1] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-04-15 02:09:33,299] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-04-15 02:09:33,846] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-15 02:09:34,728] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-04-15 02:09:35,062] [pool-1-thread-9] Initializing /data/ascb/golgi marker.tif: [testng] [2024-04-15 02:09:35,248] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-04-15 02:09:35,520] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-04-15 02:09:36,233] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-04-15 02:09:36,337] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-15 02:09:36,339] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-04-15 02:09:36,471] [pool-1-thread-7] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-04-15 02:09:36,632] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-04-15 02:09:36,961] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-04-15 02:09:37,051] [pool-1-thread-12] Initializing /data/aaron/metamorph.stk: [testng] [2024-04-15 02:09:37,567] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-04-15 02:09:37,749] [pool-1-thread-10] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-04-15 02:09:38,351] [pool-1-thread-12] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-04-15 02:09:38,472] [pool-1-thread-4] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-04-15 02:09:38,571] [pool-1-thread-2] Initializing 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list does not include base file [testng] [2024-04-15 02:09:52,078] [pool-1-thread-5] Initializing /data/samples/10xcalib.stk: [testng] [2024-04-15 02:09:52,118] [pool-1-thread-7] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-04-15 02:09:52,318] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-04-15 02:09:53,237] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-15 02:09:53,348] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-04-15 02:09:53,421] [pool-1-thread-10] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-04-15 02:09:54,269] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-04-15 02:09:54,831] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-04-15 02:09:54,979] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-15 02:09:55,054] [pool-1-thread-10] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-04-15 02:09:56,652] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-15 02:09:56,851] [pool-1-thread-8] Initializing /data/josh/2101to600b.stk: [testng] [2024-04-15 02:09:58,256] [pool-1-thread-2] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-04-15 02:09:58,412] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-04-15 02:09:58,614] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-04-15 02:09:58,765] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-15 02:09:59,359] [pool-1-thread-5] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-04-15 02:09:59,490] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-04-15 02:09:59,603] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-04-15 02:09:59,653] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-15 02:09:59,734] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-15 02:10:00,092] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-04-15 02:10:00,814] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-04-15 02:10:00,948] [pool-1-thread-4] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-04-15 02:10:01,154] [pool-1-thread-1] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-04-15 02:10:02,349] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-15 02:10:02,369] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-15 02:10:02,770] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-04-15 02:10:02,816] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-15 02:10:02,880] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-04-15 02:10:02,927] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-15 02:10:03,335] [pool-1-thread-11] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-04-15 02:10:04,842] [pool-1-thread-4] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-04-15 02:10:05,424] [pool-1-thread-11] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-04-15 02:10:05,498] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-04-15 02:10:05,556] [pool-1-thread-4] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-04-15 02:10:06,327] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-15 02:10:06,376] [pool-1-thread-8] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-04-15 02:10:06,792] [pool-1-thread-11] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-04-15 02:10:07,393] [pool-1-thread-5] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-04-15 02:10:07,466] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-04-15 02:10:07,515] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-15 02:10:07,625] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-04-15 02:10:07,783] [pool-1-thread-11] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-04-15 02:10:08,577] [pool-1-thread-5] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-04-15 02:10:10,140] [pool-1-thread-12] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-04-15 02:10:10,321] [pool-1-thread-7] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-04-15 02:10:10,560] [pool-1-thread-7] Initializing /data/jerome/deconv.STK: [testng] [2024-04-15 02:10:11,010] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-04-15 02:10:11,385] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-04-15 02:10:11,742] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-04-15 02:10:12,058] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-04-15 02:10:12,169] [pool-1-thread-4] Initializing /data/jae/RGB_s34.tif: [testng] [2024-04-15 02:10:12,225] [pool-1-thread-12] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-04-15 02:10:12,690] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-04-15 02:10:12,749] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-15 02:10:12,875] [pool-1-thread-1] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-04-15 02:10:13,605] [pool-1-thread-7] Initializing /data/steve/Experiment2.tif: [testng] [2024-04-15 02:10:13,780] [pool-1-thread-1] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-04-15 02:10:13,877] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-15 02:10:14,537] [pool-1-thread-7] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-04-15 02:10:14,846] [pool-1-thread-2] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-04-15 02:10:16,417] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-04-15 02:10:17,634] [pool-1-thread-11] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-04-15 02:10:17,751] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-15 02:10:18,043] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-15 02:10:18,671] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-15 02:10:18,816] [pool-1-thread-7] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-04-15 02:10:19,052] [pool-1-thread-12] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-04-15 02:10:19,202] [pool-1-thread-1] Initializing /data/thomas/t_test2001.tif: [testng] [2024-04-15 02:10:19,640] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-04-15 02:10:19,715] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-04-15 02:10:20,024] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-04-15 02:10:20,099] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-04-15 02:10:20,250] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-04-15 02:10:20,753] [pool-1-thread-1] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-04-15 02:10:21,154] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-04-15 02:10:21,191] [pool-1-thread-3] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 10 seconds Finished: SUCCESS