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Started by upstream project "BIOFORMATS-test-repo" build number 294 originally caused by: Started by upstream project "Trigger" build number 313 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11885006798648206784.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46498_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 09:26:09,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:26:09,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:26:09,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:26:09,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:26:09,079 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:26:09,079 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:26:09,079 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:26:09,079 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:26:09,079 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5d534f5d - End of configuration. [testng] 09:26:09,080 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@51c668e3 - Registering current configuration as safe fallback point [testng] 09:26:09,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2e6a8155 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 471 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-18 09:26:09,089] [main] java.version = 17.0.2 [testng] 09:26:09,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:26:09,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:26:09,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_09-26-09.log] [testng] 09:26:09,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-18 09:26:09,192] [main] testng.directory = /data [testng] [2024-12-18 09:26:09,192] [main] testng.configDirectory = /config [testng] [2024-12-18 09:26:09,310] [main] testng.multiplier = 1.0 [testng] [2024-12-18 09:26:09,311] [main] testng.in-memory = false [testng] [2024-12-18 09:26:09,311] [main] testng.allow-missing = false [testng] [2024-12-18 09:26:09,311] [main] user.language = en [testng] [2024-12-18 09:26:09,311] [main] user.country = ${user.country} [testng] [2024-12-18 09:26:09,311] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-18 09:27:31,278] [main] ---------------------------------------- [testng] [2024-12-18 09:27:31,278] [main] Total files: 19 [testng] [2024-12-18 09:27:31,278] [main] Scan time: 81.967 s (4314 ms/file) [testng] [2024-12-18 09:27:31,279] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-18 09:28:30,497] [pool-1-thread-1] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] 09:28:30,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:28:30,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:28:30,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_09-28-30.log] [testng] 09:28:30,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d06383a - End of configuration. [testng] [2024-12-18 09:28:34,206] [pool-1-thread-12] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 09:28:34,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:28:34,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:28:34,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_09-28-34.log] [testng] 09:28:34,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22a9c749 - End of configuration. [testng] [2024-12-18 09:28:37,630] [pool-1-thread-11] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 09:28:37,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:28:37,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:28:37,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_09-28-37.log] [testng] 09:28:37,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c53376d - End of configuration. [testng] [2024-12-18 09:28:41,291] [pool-1-thread-10] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] 09:28:41,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:28:41,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:28:41,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_09-28-41.log] [testng] 09:28:41,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64e99f1a - End of configuration. [testng] [2024-12-18 09:28:43,665] [pool-1-thread-9] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] 09:28:43,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:28:43,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:28:43,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_09-28-43.log] [testng] 09:28:43,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@794e6652 - End of configuration. [testng] [2024-12-18 09:28:45,279] [pool-1-thread-8] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 09:28:45,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:28:45,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:28:45,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_09-28-45.log] [testng] 09:28:45,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e2473d0 - End of configuration. [testng] [2024-12-18 09:28:49,273] [pool-1-thread-7] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 09:28:49,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:28:49,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:28:49,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_09-28-49.log] [testng] 09:28:49,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74858736 - End of configuration. [testng] [2024-12-18 09:28:51,891] [pool-1-thread-6] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 09:28:51,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:28:51,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:28:51,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_09-28-51.log] [testng] 09:28:51,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7438bb7f - End of configuration. [testng] [2024-12-18 09:28:56,366] [pool-1-thread-5] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 09:28:56,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:28:56,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:28:56,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_09-28-56.log] [testng] 09:28:56,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ffc12ef - End of configuration. [testng] [2024-12-18 09:29:01,749] [pool-1-thread-4] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 09:29:01,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:29:01,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:29:01,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_09-29-01.log] [testng] 09:29:01,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a672113 - End of configuration. [testng] [2024-12-18 09:29:06,131] [pool-1-thread-3] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 09:29:06,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:29:06,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:29:06,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_09-29-06.log] [testng] 09:29:06,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e6f0245 - End of configuration. [testng] [2024-12-18 09:29:10,128] [pool-1-thread-2] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] 09:29:10,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:29:10,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:29:10,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_09-29-10.log] [testng] 09:29:10,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba2cebc - End of configuration. [testng] [2024-12-18 09:31:07,297] [pool-1-thread-6] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] [2024-12-18 09:31:14,839] [pool-1-thread-10] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] [2024-12-18 09:32:57,170] [pool-1-thread-11] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] [2024-12-18 09:34:54,793] [pool-1-thread-6] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] [2024-12-18 09:35:01,889] [pool-1-thread-11] Initializing /data/todd/movement-1.htm: [testng] [2024-12-18 09:35:24,454] [pool-1-thread-9] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 47 minutes 35 seconds Finished: SUCCESS