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Started by upstream project "BIOFORMATS-test-repo" build number 34 originally caused by: Started by upstream project "Trigger" build number 38 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12426584659363494976.sh + '[' fits = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_4651_merge_ci -v /uod/idr/repos/curated/fits:/data -v /uod/idr-scratch/merge-ci/curated/fits:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:09:31,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:09:31,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:09:31,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:09:31,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:09:31,329 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:09:31,330 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:09:31,330 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:09:31,330 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:09:31,331 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:09:31,332 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:09:31,332 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 601 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-15 02:09:31,358] [main] java.version = 1.8.0_342 [testng] 02:09:31,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:09:31,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:31,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_02-09-31.log] [testng] 02:09:31,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-15 02:09:31,437] [main] testng.directory = /data [testng] [2024-04-15 02:09:31,438] [main] testng.configDirectory = /config [testng] [2024-04-15 02:09:31,499] [main] testng.multiplier = 1.0 [testng] [2024-04-15 02:09:31,500] [main] testng.in-memory = false [testng] [2024-04-15 02:09:31,500] [main] testng.allow-missing = false [testng] [2024-04-15 02:09:31,500] [main] user.language = fr [testng] [2024-04-15 02:09:31,500] [main] user.country = FR [testng] [2024-04-15 02:09:31,500] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-15 02:09:32,102] [main] ---------------------------------------- [testng] [2024-04-15 02:09:32,103] [main] Total files: 8 [testng] [2024-04-15 02:09:32,103] [main] Scan time: 0.602 s (75 ms/file) [testng] [2024-04-15 02:09:32,103] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 8 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-15 02:09:33,290] [pool-1-thread-1] Initializing /data/curtis/x.fits: [testng] 02:09:33,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:09:33,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:33,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_02-09-33.log] [testng] 02:09:33,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44da7a01 - End of configuration. [testng] [2024-04-15 02:09:33,366] [pool-1-thread-8] Initializing /data/jacques/spool_b._X7.fits: [testng] 02:09:33,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:09:33,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:33,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_02-09-33.log] [testng] 02:09:33,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c7dd166 - End of configuration. [testng] [2024-04-15 02:09:33,387] [pool-1-thread-7] Initializing /data/curtis/rosat.fits: [testng] 02:09:33,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:09:33,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:33,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_02-09-33.log] [testng] 02:09:33,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63341678 - End of configuration. [testng] [2024-04-15 02:09:33,399] [pool-1-thread-6] Initializing /data/curtis/vogtstar.fits: [testng] 02:09:33,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:09:33,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:33,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_02-09-33.log] [testng] 02:09:33,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@276f289d - End of configuration. [testng] [2024-04-15 02:09:33,414] [pool-1-thread-5] Initializing /data/jacques/spool_c_Jacques_Pecreaux._X2.fits: [testng] 02:09:33,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:09:33,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:33,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_02-09-33.log] [testng] 02:09:33,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e8de943 - End of configuration. [testng] [2024-04-15 02:09:33,428] [pool-1-thread-4] Initializing /data/jacques/spool_b._X7.061023-2.fits: [testng] 02:09:33,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:09:33,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:33,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_02-09-33.log] [testng] 02:09:33,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@739a63fd - End of configuration. [testng] [2024-04-15 02:09:33,451] [pool-1-thread-3] Initializing /data/hla/hlsp_coma_hst_acs-wfc_v19_f814w_v1_ivm-drz-cl.fits: [testng] 02:09:33,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:09:33,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:33,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_02-09-33.log] [testng] 02:09:33,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3793f155 - End of configuration. [testng] [2024-04-15 02:09:33,463] [pool-1-thread-2] Initializing /data/curtis/rosat.fits.gz: [testng] 02:09:33,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:09:33,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:33,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_02-09-33.log] [testng] 02:09:33,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7504e0f0 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 424, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS