![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 294 originally caused by: Started by upstream project "Trigger" build number 313 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6531526108035194550.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46563_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 16:04:36,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 16:04:36,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 16:04:36,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:04:36,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:04:36,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 16:04:36,358 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 16:04:36,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 16:04:36,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:04:36,359 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:04:36,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 16:04:36,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 16:04:36,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 16:04:36,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 16:04:36,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 16:04:36,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 16:04:36,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 16:04:36,540 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 16:04:36,540 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 16:04:36,540 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 16:04:36,540 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 16:04:36,540 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 16:04:36,541 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 16:04:36,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-18 16:04:36,549] [main] java.version = 17.0.2 [testng] 16:04:36,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 16:04:36,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:04:36,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_16-04-36.log] [testng] 16:04:36,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-18 16:04:36,594] [main] testng.directory = /data [testng] [2024-12-18 16:04:36,594] [main] testng.configDirectory = /config [testng] [2024-12-18 16:04:36,602] [main] testng.multiplier = 1.0 [testng] [2024-12-18 16:04:36,603] [main] testng.in-memory = false [testng] [2024-12-18 16:04:36,603] [main] testng.allow-missing = false [testng] [2024-12-18 16:04:36,603] [main] user.language = en [testng] [2024-12-18 16:04:36,603] [main] user.country = ${user.country} [testng] [2024-12-18 16:04:36,603] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-18 16:05:40,104] [main] ---------------------------------------- [testng] [2024-12-18 16:05:40,104] [main] Total files: 31 [testng] [2024-12-18 16:05:40,104] [main] Scan time: 63.501 s (2048 ms/file) [testng] [2024-12-18 16:05:40,104] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-18 16:06:46,958] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 16:06:46,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 16:06:46,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:06:46,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_16-06-46.log] [testng] 16:06:46,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f9eda64 - End of configuration. [testng] [2024-12-18 16:06:49,435] [pool-1-thread-12] Initializing /data/vikram/Captured 3.jp2: [testng] 16:06:49,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 16:06:49,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:06:49,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_16-06-49.log] [testng] 16:06:49,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d42c0cc - End of configuration. [testng] [2024-12-18 16:06:51,420] [pool-1-thread-11] Initializing /data/david/C1R1_FOS.jp2: [testng] 16:06:51,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 16:06:51,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:06:51,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_16-06-51.log] [testng] 16:06:51,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171fe10a - End of configuration. [testng] [2024-12-18 16:06:52,663] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jp2: [testng] 16:06:52,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 16:06:52,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:06:52,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_16-06-52.log] [testng] 16:06:52,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f09356 - End of configuration. [testng] [2024-12-18 16:06:53,988] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 16:06:53,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 16:06:53,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:06:53,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_16-06-53.log] [testng] 16:06:53,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dd9cda3 - End of configuration. [testng] [2024-12-18 16:06:57,407] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 16:06:57,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 16:06:57,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:06:57,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_16-06-57.log] [testng] 16:06:57,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9181412 - End of configuration. [testng] [2024-12-18 16:07:00,411] [pool-1-thread-7] Initializing /data/david/multichannel-2d test.jp2: [testng] 16:07:00,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 16:07:00,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:07:00,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_16-07-00.log] [testng] 16:07:00,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719e3858 - End of configuration. [testng] [2024-12-18 16:07:02,538] [pool-1-thread-6] Initializing /data/misc/clown-rgb.jpc: [testng] 16:07:02,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 16:07:02,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:07:02,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_16-07-02.log] [testng] 16:07:02,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b34d2fe - End of configuration. [testng] [2024-12-18 16:07:04,327] [pool-1-thread-5] Initializing /data/kraig/head.jp2: [testng] 16:07:04,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 16:07:04,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:07:04,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_16-07-04.log] [testng] 16:07:04,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11c8966d - End of configuration. [testng] [2024-12-18 16:07:05,853] [pool-1-thread-4] Initializing /data/big-images/2kx2k.jpf: [testng] 16:07:05,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 16:07:05,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:07:05,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_16-07-05.log] [testng] 16:07:05,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b8e9413 - End of configuration. [testng] [2024-12-18 16:07:07,678] [pool-1-thread-3] Initializing /data/frans/flower.jp2: [testng] 16:07:07,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 16:07:07,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:07:07,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_16-07-07.log] [testng] 16:07:07,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d4d4eb5 - End of configuration. [testng] [2024-12-18 16:07:10,384] [pool-1-thread-2] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 16:07:10,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 16:07:10,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:07:10,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_16-07-10.log] [testng] 16:07:10,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43013d29 - End of configuration. [testng] [2024-12-18 16:07:36,570] [pool-1-thread-6] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-12-18 16:07:41,929] [pool-1-thread-10] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-12-18 16:07:46,111] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-12-18 16:07:52,436] [pool-1-thread-12] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-12-18 16:07:58,516] [pool-1-thread-4] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-12-18 16:08:06,441] [pool-1-thread-3] Initializing /data/david/cy5-tph.jp2: [testng] [2024-12-18 16:08:17,979] [pool-1-thread-9] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-12-18 16:08:26,764] [pool-1-thread-8] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-12-18 16:08:30,930] [pool-1-thread-11] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-12-18 16:08:33,013] [pool-1-thread-6] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-12-18 16:08:37,413] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-12-18 16:08:55,017] [pool-1-thread-12] Initializing /data/david/000000_000001.jpx: [testng] [2024-12-18 16:09:06,038] [pool-1-thread-6] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-12-18 16:09:10,502] [pool-1-thread-11] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-12-18 16:09:14,460] [pool-1-thread-8] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-12-18 16:09:22,713] [pool-1-thread-9] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-12-18 16:09:26,006] [pool-1-thread-5] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-12-18 16:09:30,853] [pool-1-thread-12] Initializing /data/vikram/Captured 1.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 19 seconds Finished: SUCCESS