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Started by upstream project "BIOFORMATS-test-repo" build number 295 originally caused by: Started by upstream project "Trigger" build number 314 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins8307683866960906314.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46574_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:25,018 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:25,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:22:25,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:25,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:25,020 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:25,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:25,021 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:25,021 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:25,022 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:25,022 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:25,022 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:25,023 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:25,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:25,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:25,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:25,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:25,214 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:25,214 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:25,214 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:25,215 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:25,215 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:22:25,216 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:22:25,216 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-19 00:22:25,224] [main] java.version = 21 [testng] 00:22:25,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:25,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:25,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-19_00-22-25.log] [testng] 00:22:25,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-19 00:22:25,271] [main] testng.directory = /data [testng] [2024-12-19 00:22:25,271] [main] testng.configDirectory = /config [testng] [2024-12-19 00:22:25,280] [main] testng.multiplier = 1.0 [testng] [2024-12-19 00:22:25,280] [main] testng.in-memory = false [testng] [2024-12-19 00:22:25,280] [main] testng.allow-missing = false [testng] [2024-12-19 00:22:25,281] [main] user.language = en [testng] [2024-12-19 00:22:25,281] [main] user.country = ${user.country} [testng] [2024-12-19 00:22:25,281] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-19 00:22:31,738] [main] ---------------------------------------- [testng] [2024-12-19 00:22:31,738] [main] Total files: 103 [testng] [2024-12-19 00:22:31,738] [main] Scan time: 6.457 s (62 ms/file) [testng] [2024-12-19 00:22:31,740] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-19 00:22:51,050] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] 00:22:51,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:51,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-19_00-22-51.log] [testng] 00:22:51,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2862762f - End of configuration. [testng] [2024-12-19 00:22:51,145] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] 00:22:51,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:51,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-19_00-22-51.log] [testng] 00:22:51,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a4a3984 - End of configuration. [testng] [2024-12-19 00:22:51,221] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] 00:22:51,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:51,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-19_00-22-51.log] [testng] 00:22:51,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32617acc - End of configuration. [testng] [2024-12-19 00:22:51,343] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] 00:22:51,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:51,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-19_00-22-51.log] [testng] 00:22:51,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@624de0bf - End of configuration. [testng] [2024-12-19 00:22:51,443] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] 00:22:51,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:51,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-19_00-22-51.log] [testng] 00:22:51,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e41265c - End of configuration. [testng] [2024-12-19 00:22:51,518] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] 00:22:51,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:51,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-19_00-22-51.log] [testng] 00:22:51,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ecb8847 - End of configuration. [testng] [2024-12-19 00:22:51,649] [pool-1-thread-7] Initializing /data/jay/DMtest2.dm3: [testng] 00:22:51,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:51,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-19_00-22-51.log] [testng] 00:22:51,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78cda41f - End of configuration. [testng] [2024-12-19 00:22:51,843] [pool-1-thread-6] Initializing /data/chip/Nanogold-1.dm3: [testng] 00:22:51,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:51,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:51,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-19_00-22-51.log] [testng] 00:22:51,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fde1eb4 - End of configuration. [testng] [2024-12-19 00:22:52,128] [pool-1-thread-5] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] 00:22:52,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:52,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:52,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-19_00-22-52.log] [testng] 00:22:52,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bfa1ecc - End of configuration. [testng] [2024-12-19 00:22:52,643] [pool-1-thread-4] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] 00:22:52,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:52,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:52,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-19_00-22-52.log] [testng] 00:22:52,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@671da89c - End of configuration. [testng] [2024-12-19 00:22:52,713] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] 00:22:52,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:52,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:52,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-19_00-22-52.log] [testng] 00:22:52,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ed9c18d - End of configuration. [testng] [2024-12-19 00:22:52,765] [pool-1-thread-2] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] 00:22:52,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:52,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:52,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-19_00-22-52.log] [testng] 00:22:52,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@344708d2 - End of configuration. [testng] [2024-12-19 00:22:55,708] [pool-1-thread-9] Initializing /data/jay/dnasample.tif: [testng] [2024-12-19 00:22:56,525] [pool-1-thread-1] Initializing /data/ofra/lowloss.dm3: [testng] [2024-12-19 00:22:56,713] [pool-1-thread-10] Initializing /data/jay/smallerfile.dm3: [testng] [2024-12-19 00:22:56,796] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2024-12-19 00:22:56,966] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-12-19 00:22:57,604] [pool-1-thread-1] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-12-19 00:22:57,953] [pool-1-thread-11] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-12-19 00:22:58,382] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2024-12-19 00:22:58,467] [pool-1-thread-2] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2024-12-19 00:22:58,537] [pool-1-thread-5] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-12-19 00:22:59,694] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-12-19 00:22:59,820] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-12-19 00:23:00,628] [pool-1-thread-4] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-12-19 00:23:00,715] [pool-1-thread-5] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-12-19 00:23:01,850] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2024-12-19 00:23:01,972] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-12-19 00:23:02,426] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-12-19 00:23:03,214] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-12-19 00:23:03,548] [pool-1-thread-1] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-12-19 00:23:03,786] [pool-1-thread-2] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-12-19 00:23:05,342] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-12-19 00:23:05,507] [pool-1-thread-11] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-12-19 00:23:05,818] [pool-1-thread-4] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-12-19 00:23:06,862] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-12-19 00:23:09,992] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-12-19 00:23:10,082] [pool-1-thread-1] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-12-19 00:23:10,583] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-12-19 00:23:10,876] [pool-1-thread-2] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-12-19 00:23:13,344] [pool-1-thread-12] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-12-19 00:23:14,060] [pool-1-thread-11] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-12-19 00:23:14,718] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-12-19 00:23:16,117] [pool-1-thread-5] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-12-19 00:23:16,411] [pool-1-thread-3] Initializing /data/qa-7642/8.dm4: [testng] [2024-12-19 00:23:17,353] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2024-12-19 00:23:17,900] [pool-1-thread-11] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-12-19 00:23:19,136] [pool-1-thread-7] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-12-19 00:23:20,923] [pool-1-thread-8] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-12-19 00:23:22,546] [pool-1-thread-5] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-12-19 00:23:23,171] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-12-19 00:23:23,754] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-12-19 00:23:25,338] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-12-19 00:23:25,797] [pool-1-thread-9] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-12-19 00:23:27,574] [pool-1-thread-6] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-12-19 00:23:28,021] [pool-1-thread-2] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-12-19 00:23:29,961] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-12-19 00:23:30,396] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-12-19 00:23:31,021] [pool-1-thread-4] Initializing /data/jay/DMtest.dm3: [testng] [2024-12-19 00:23:31,579] [pool-1-thread-10] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-12-19 00:23:33,464] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-12-19 00:23:34,127] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-12-19 00:23:34,999] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-12-19 00:23:35,933] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-12-19 00:23:36,772] [pool-1-thread-7] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-12-19 00:23:38,735] [pool-1-thread-5] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-12-19 00:23:40,473] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-12-19 00:23:40,789] [pool-1-thread-4] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-12-19 00:23:44,068] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-12-19 00:23:44,305] [pool-1-thread-8] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-12-19 00:23:44,542] [pool-1-thread-12] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-12-19 00:23:44,789] [pool-1-thread-11] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-12-19 00:23:45,085] [pool-1-thread-1] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-12-19 00:23:46,677] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-12-19 00:23:47,436] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-12-19 00:23:48,478] [pool-1-thread-8] Initializing /data/jay/dnasample1.dm3: [testng] [2024-12-19 00:23:48,724] [pool-1-thread-2] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-12-19 00:23:51,149] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-12-19 00:23:51,979] [pool-1-thread-12] Initializing /data/qa-21761/example.dm4: [testng] [2024-12-19 00:23:52,401] [pool-1-thread-10] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2024-12-19 00:23:53,024] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2024-12-19 00:23:53,287] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-12-19 00:23:53,719] [pool-1-thread-3] Initializing /data/jay/Carbon.34.dm3: [testng] [2024-12-19 00:23:54,792] [pool-1-thread-5] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-12-19 00:23:55,512] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-12-19 00:23:56,135] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2024-12-19 00:23:56,734] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-12-19 00:23:57,386] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-12-19 00:23:57,701] [pool-1-thread-9] Initializing /data/samples/test-tiles.dm3: [testng] [2024-12-19 00:23:59,144] [pool-1-thread-10] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-12-19 00:23:59,403] [pool-1-thread-3] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-12-19 00:23:59,656] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-12-19 00:23:59,880] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-12-19 00:24:00,586] [pool-1-thread-11] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-12-19 00:24:02,565] [pool-1-thread-1] Initializing /data/jay/camtest1.dm3: [testng] [2024-12-19 00:24:02,797] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-12-19 00:24:04,570] [pool-1-thread-12] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2024-12-19 00:24:06,060] [pool-1-thread-2] Initializing /data/melissa/annotation-test.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 59 seconds Finished: SUCCESS