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Started by upstream project "BIOFORMATS-test-repo" build number 295 originally caused by: Started by upstream project "Trigger" build number 314 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins15434615178625509320.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46701_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:02:16,128 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:02:16,130 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 04:02:16,130 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:02:16,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:02:16,131 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:02:16,131 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:02:16,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:02:16,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:02:16,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:02:16,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:02:16,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:02:16,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:02:16,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:02:16,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:02:16,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:02:16,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:02:16,338 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:02:16,339 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:02:16,339 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:02:16,339 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:02:16,339 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 04:02:16,340 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 04:02:16,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-19 04:02:16,350] [main] java.version = 21 [testng] 04:02:16,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:02:16,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:02:16,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-19_04-02-16.log] [testng] 04:02:16,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-19 04:02:16,400] [main] testng.directory = /data [testng] [2024-12-19 04:02:16,400] [main] testng.configDirectory = /config [testng] [2024-12-19 04:02:16,409] [main] testng.multiplier = 1.0 [testng] [2024-12-19 04:02:16,410] [main] testng.in-memory = false [testng] [2024-12-19 04:02:16,410] [main] testng.allow-missing = false [testng] [2024-12-19 04:02:16,410] [main] user.language = en [testng] [2024-12-19 04:02:16,410] [main] user.country = ${user.country} [testng] [2024-12-19 04:02:16,410] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-19 04:07:00,019] [main] ---------------------------------------- [testng] [2024-12-19 04:07:00,020] [main] Total files: 15735 [testng] [2024-12-19 04:07:00,020] [main] Scan time: 283.609 s (18 ms/file) [testng] [2024-12-19 04:07:00,020] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-19 04:12:27,951] [pool-1-thread-1] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] 04:12:27,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:12:27,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:27,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-19_04-12-27.log] [testng] 04:12:27,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fcf6db4 - End of configuration. [testng] [2024-12-19 04:12:30,413] [pool-1-thread-12] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] 04:12:30,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:12:30,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:30,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-19_04-12-30.log] [testng] 04:12:30,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cabdd82 - End of configuration. [testng] [2024-12-19 04:12:32,482] [pool-1-thread-11] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] 04:12:32,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:12:32,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:32,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-19_04-12-32.log] [testng] 04:12:32,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c43e99 - End of configuration. [testng] [2024-12-19 04:12:34,594] [pool-1-thread-10] Initializing /data/converted/michel/c.tif: [testng] 04:12:34,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:12:34,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:34,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-19_04-12-34.log] [testng] 04:12:34,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@544fd711 - End of configuration. [testng] [2024-12-19 04:12:36,405] [pool-1-thread-9] Initializing /data/converted/converted/mri-stack.tif: [testng] 04:12:36,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:12:36,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:36,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-19_04-12-36.log] [testng] 04:12:36,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@656fbb2c - End of configuration. [testng] [2024-12-19 04:12:38,280] [pool-1-thread-8] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] 04:12:38,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:12:38,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:38,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-19_04-12-38.log] [testng] 04:12:38,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fd52919 - End of configuration. [testng] [2024-12-19 04:12:40,043] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] 04:12:40,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:12:40,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:40,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-19_04-12-40.log] [testng] 04:12:40,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a25cb77 - End of configuration. [testng] [2024-12-19 04:12:41,758] [pool-1-thread-6] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] 04:12:41,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:12:41,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:41,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-19_04-12-41.log] [testng] 04:12:41,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aba04f8 - End of configuration. [testng] [2024-12-19 04:12:43,471] [pool-1-thread-5] Initializing /data/converted/lior/live+cf2b.tif: [testng] 04:12:43,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:12:43,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:43,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-19_04-12-43.log] [testng] 04:12:43,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@221f9f79 - End of configuration. [testng] [2024-12-19 04:12:45,080] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] 04:12:45,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:12:45,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:45,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-19_04-12-45.log] [testng] 04:12:45,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55e7b925 - End of configuration. [testng] [2024-12-19 04:12:47,167] [pool-1-thread-3] Initializing /data/othmar/mozaic.tif: [testng] 04:12:47,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:12:47,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:47,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-19_04-12-47.log] [testng] 04:12:47,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16f76c02 - End of configuration. [testng] [2024-12-19 04:12:48,942] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] 04:12:48,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:12:48,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:48,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-19_04-12-48.log] [testng] 04:12:48,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ede508b - End of configuration. [testng] [2024-12-19 04:13:04,241] [pool-1-thread-11] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-19 04:13:21,557] [pool-1-thread-9] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-19 04:13:23,861] [pool-1-thread-8] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-12-19 04:13:25,930] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-19 04:13:27,992] [pool-1-thread-7] Initializing /data/converted/converted/2chz.tif: [testng] [2024-12-19 04:13:29,995] [pool-1-thread-2] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-19 04:13:42,861] [pool-1-thread-10] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-19 04:13:54,508] [pool-1-thread-5] Initializing /data/converted/nicolas/image.tif: [testng] [2024-12-19 04:14:19,707] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-19 04:14:26,386] [pool-1-thread-5] Initializing /data/scott/Slide133-11.tif: [testng] [2024-12-19 04:14:28,618] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-12-19 04:15:05,777] [pool-1-thread-5] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-12-19 04:15:22,535] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-19 04:16:40,341] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-19 04:17:53,014] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-19 04:19:03,982] [pool-1-thread-7] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-19 04:19:27,304] [pool-1-thread-3] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-12-19 04:19:55,421] [pool-1-thread-2] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-12-19 04:20:17,164] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-19 04:21:32,489] [pool-1-thread-6] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-19 04:21:52,347] [pool-1-thread-3] Initializing /data/converted/converted/damian.tif: [testng] [2024-12-19 04:22:39,429] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-12-19 04:24:20,921] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-19 04:25:08,668] [pool-1-thread-6] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-12-19 04:26:16,535] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-19 04:26:37,136] [pool-1-thread-4] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-19 04:27:30,370] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-12-19 04:30:23,687] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-12-19 04:31:27,236] [pool-1-thread-7] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-19 04:32:21,708] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-12-19 04:32:40,272] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-19 04:32:51,264] [pool-1-thread-7] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-12-19 04:33:05,204] [pool-1-thread-11] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-12-19 04:33:41,368] [pool-1-thread-7] Initializing /data/converted/michel/d.tif: [testng] [2024-12-19 04:33:48,038] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-19 04:34:17,920] [pool-1-thread-10] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-12-19 04:34:40,770] [pool-1-thread-7] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-19 04:35:20,454] [pool-1-thread-10] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-19 04:36:15,725] [pool-1-thread-10] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-19 04:40:48,618] [pool-1-thread-9] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-19 04:40:53,037] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-19 04:43:02,694] [pool-1-thread-4] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-19 04:44:01,495] [pool-1-thread-3] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-19 04:44:51,540] [pool-1-thread-6] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-12-19 04:46:50,368] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-12-19 04:48:13,225] [pool-1-thread-7] Initializing /data/converted/dietmar/138.tif: [testng] [2024-12-19 04:48:26,128] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-12-19 04:49:16,845] [pool-1-thread-8] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-19 04:49:37,474] [pool-1-thread-9] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-12-19 04:50:52,576] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-12-19 04:51:25,863] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-19 04:53:37,656] [pool-1-thread-5] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-19 04:59:43,224] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-19 05:05:42,718] [pool-1-thread-7] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-12-19 05:06:16,450] [pool-1-thread-1] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-19 05:06:35,985] [pool-1-thread-12] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-12-19 05:07:04,443] [pool-1-thread-9] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-12-19 05:07:09,264] [pool-1-thread-7] Initializing /data/converted/sebastien/test.tif: [testng] [2024-12-19 05:07:31,311] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-19 05:08:05,209] [pool-1-thread-9] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-12-19 05:09:08,652] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-12-19 05:09:25,686] [pool-1-thread-6] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-12-19 05:16:28,785] [pool-1-thread-9] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-12-19 05:17:25,004] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-12-19 05:18:10,317] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-19 05:19:49,891] [pool-1-thread-9] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-12-19 05:24:08,935] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-19 05:24:56,718] [pool-1-thread-8] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-19 05:25:50,902] [pool-1-thread-7] Initializing /data/scott/Slide133-04.tif: [testng] [2024-12-19 05:26:55,207] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-12-19 05:27:00,072] [pool-1-thread-5] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-19 05:27:19,755] [pool-1-thread-4] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-12-19 05:28:10,146] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-19 05:28:34,897] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-19 05:29:04,073] [pool-1-thread-5] Initializing /data/scott/Slide133-08.tif: [testng] [2024-12-19 05:29:26,478] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-19 05:30:07,378] [pool-1-thread-5] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-19 05:32:59,591] [pool-1-thread-9] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-12-19 05:34:19,578] [pool-1-thread-5] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-19 05:35:12,988] [pool-1-thread-11] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-12-19 05:35:47,349] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-19 05:36:04,077] [pool-1-thread-11] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-12-19 05:39:44,138] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] 05:42:00,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:42:00,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:00,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-19_05-42-00.log] [testng] 05:42:00,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a990010 - End of configuration. [testng] [2024-12-19 05:42:09,115] [pool-1-thread-7] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] 05:48:41,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:48:41,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:48:41,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-19_05-48-41.log] [testng] 05:48:41,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52f1f05b - End of configuration. [testng] [2024-12-19 05:48:55,838] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-19 05:49:13,528] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-19 05:49:34,977] [pool-1-thread-10] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-12-19 05:50:00,823] [pool-1-thread-7] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-12-19 05:50:28,472] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-19 05:50:44,914] [pool-1-thread-8] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-12-19 05:51:54,345] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-12-19 05:53:48,847] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-19 05:54:47,286] [pool-1-thread-9] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-19 05:54:57,598] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-19 05:55:13,243] [pool-1-thread-1] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-19 05:56:08,303] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-12-19 05:57:48,818] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-19 05:58:13,188] [pool-1-thread-6] Initializing /data/scott/Slide133-01.tif: [testng] [2024-12-19 05:58:32,269] [pool-1-thread-10] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-12-19 05:58:56,871] [pool-1-thread-6] Initializing /data/converted/michel/b.tif: [testng] [2024-12-19 05:59:09,057] [pool-1-thread-1] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-12-19 05:59:45,086] [pool-1-thread-10] Initializing /data/converted/michel/e.tif: [testng] [2024-12-19 05:59:50,516] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-19 05:59:53,009] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-19 06:01:07,104] [pool-1-thread-10] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-12-19 06:02:01,417] [pool-1-thread-10] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-19 06:02:18,041] [pool-1-thread-11] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-12-19 06:03:01,750] [pool-1-thread-11] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-12-19 06:03:07,247] [pool-1-thread-5] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-12-19 06:04:54,671] [pool-1-thread-8] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-19 06:05:34,486] [pool-1-thread-8] Initializing /data/converted/michel/a.tif: [testng] [2024-12-19 06:06:01,813] [pool-1-thread-7] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-19 06:06:09,012] [pool-1-thread-8] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] 06:07:26,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:07:26,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:07:26,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-19_06-07-26.log] [testng] 06:07:26,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39d3d43e - End of configuration. [testng] 06:09:31,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:09:31,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:09:31,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-19_06-09-31.log] [testng] 06:09:31,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b80b8f2 - End of configuration. [testng] 07:19:27,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:19:27,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:19:27,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-19_07-19-27.log] [testng] 07:19:27,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bc6400e - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 197 minutes 15 seconds Finished: SUCCESS