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Started by upstream project "BIOFORMATS-test-repo" build number 34 originally caused by: Started by upstream project "Trigger" build number 38 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13853672848359989377.sh + '[' mng = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_4672_merge_ci -v /uod/idr/repos/curated/mng:/data -v /uod/idr-scratch/merge-ci/curated/mng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:16:05,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:16:05,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:16:05,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:16:05,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:16:05,610 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:16:05,611 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:16:05,611 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:16:05,612 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:16:05,612 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:16:05,614 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:16:05,614 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 495 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-15 02:16:05,633] [main] java.version = 1.8.0_342 [testng] 02:16:05,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:16:05,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:05,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_02-16-05.log] [testng] 02:16:05,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-15 02:16:05,718] [main] testng.directory = /data [testng] [2024-04-15 02:16:05,718] [main] testng.configDirectory = /config [testng] [2024-04-15 02:16:05,742] [main] testng.multiplier = 1.0 [testng] [2024-04-15 02:16:05,743] [main] testng.in-memory = false [testng] [2024-04-15 02:16:05,743] [main] testng.allow-missing = false [testng] [2024-04-15 02:16:05,743] [main] user.language = fr [testng] [2024-04-15 02:16:05,743] [main] user.country = FR [testng] [2024-04-15 02:16:05,743] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-15 02:16:07,247] [main] ---------------------------------------- [testng] [2024-04-15 02:16:07,248] [main] Total files: 78 [testng] [2024-04-15 02:16:07,248] [main] Scan time: 1.503 s (19 ms/file) [testng] [2024-04-15 02:16:07,248] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 78 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-15 02:16:26,772] [pool-1-thread-1] Initializing /data/images/MNGPAST16a.mng: [testng] 02:16:26,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:16:26,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_02-16-26.log] [testng] 02:16:26,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a342dc3 - End of configuration. [testng] [2024-04-15 02:16:26,848] [pool-1-thread-12] Initializing /data/images/png/MNGPAST-eightA.png: [testng] 02:16:26,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:16:26,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-15_02-16-26.log] [testng] 02:16:26,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f7df555 - End of configuration. [testng] [2024-04-15 02:16:26,857] [pool-1-thread-11] Initializing /data/images/Delta-gray16.mng: [testng] 02:16:26,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:16:26,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-15_02-16-26.log] [testng] 02:16:26,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c13523d - End of configuration. [testng] [2024-04-15 02:16:26,880] [pool-1-thread-10] Initializing /data/images/MNGTERM1.mng: [testng] 02:16:26,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:16:26,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-15_02-16-26.log] [testng] 02:16:26,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7329199b - End of configuration. [testng] [2024-04-15 02:16:26,898] [pool-1-thread-9] Initializing /data/images/PNGCH-CC.mng: [testng] 02:16:26,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:16:26,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-15_02-16-26.log] [testng] 02:16:26,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@776b4315 - End of configuration. [testng] [2024-04-15 02:16:26,918] [pool-1-thread-8] Initializing /data/images/MNGTERM3-5.mng: [testng] 02:16:26,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:16:26,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_02-16-26.log] [testng] 02:16:26,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6152b949 - End of configuration. [testng] [2024-04-15 02:16:26,936] [pool-1-thread-7] Initializing /data/images/PNGSxxxx.mng: [testng] 02:16:26,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:16:26,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_02-16-26.log] [testng] 02:16:26,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74f91aec - End of configuration. [testng] [2024-04-15 02:16:26,979] [pool-1-thread-6] Initializing /data/images/Waves1.mng: [testng] 02:16:26,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:16:26,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_02-16-26.log] [testng] 02:16:26,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fb45e92 - End of configuration. [testng] [2024-04-15 02:16:26,990] [pool-1-thread-5] Initializing /data/images/Delta-gray2.mng: [testng] 02:16:26,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:16:26,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_02-16-26.log] [testng] 02:16:26,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f46e789 - End of configuration. [testng] [2024-04-15 02:16:27,013] [pool-1-thread-4] Initializing /data/images/scrollOne.mng: [testng] 02:16:27,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:16:27,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:27,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_02-16-27.log] [testng] 02:16:27,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dfdb542 - End of configuration. [testng] [2024-04-15 02:16:27,026] [pool-1-thread-3] Initializing /data/images/PNGBASxx.mng: [testng] 02:16:27,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:16:27,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:27,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_02-16-27.log] [testng] 02:16:27,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b96a82 - End of configuration. [testng] [2024-04-15 02:16:27,056] [pool-1-thread-2] Initializing /data/images/Delta-rgb16.mng: [testng] 02:16:27,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:16:27,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:27,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_02-16-27.log] [testng] 02:16:27,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dc76895 - End of configuration. [testng] [2024-04-15 02:16:29,168] [pool-1-thread-8] Initializing /data/images/Delta-gray-a8b.mng: [testng] [2024-04-15 02:16:29,194] [pool-1-thread-4] Initializing /data/images/png/Delta-gray-aEightW.png: [testng] [2024-04-15 02:16:29,198] [pool-1-thread-6] Initializing /data/images/MNGTERM3-2.mng: [testng] [2024-04-15 02:16:29,211] [pool-1-thread-1] Initializing /data/images/Delta-gray1.mng: [testng] [2024-04-15 02:16:29,228] [pool-1-thread-10] Initializing /data/images/Delta-rgb-a16w.mng: [testng] [2024-04-15 02:16:29,254] [pool-1-thread-12] Initializing /data/images/Waves3.mng: [testng] [2024-04-15 02:16:29,263] [pool-1-thread-2] Initializing /data/images/png/MNGPAST16b.png: [testng] [2024-04-15 02:16:29,270] [pool-1-thread-5] Initializing /data/images/png/MNGPAST16a.png: [testng] [2024-04-15 02:16:29,276] [pool-1-thread-11] Initializing /data/images/MNGTERM3-3.mng: [testng] [2024-04-15 02:16:29,290] [pool-1-thread-9] Initializing /data/roger/Well D2_01.mng: [testng] [2024-04-15 02:16:32,400] [pool-1-thread-3] Initializing /data/images/png/Delta-grayEight.png: [testng] [2024-04-15 02:16:32,404] [pool-1-thread-7] Initializing /data/images/png/Delta-gray-a16b.png: [testng] [2024-04-15 02:16:32,897] [pool-1-thread-5] Initializing /data/images/scrollThree.mng: [testng] [2024-04-15 02:16:32,907] [pool-1-thread-3] Initializing /data/images/PNGCMSPx.mng: [testng] [2024-04-15 02:16:32,928] [pool-1-thread-2] Initializing /data/images/DUTCH-two.mng: [testng] [2024-04-15 02:16:32,939] [pool-1-thread-12] Initializing /data/images/png/PROM-repl.png: [testng] [2024-04-15 02:16:32,979] [pool-1-thread-11] Initializing /data/images/MNGTERM2.mng: [testng] [2024-04-15 02:16:32,995] [pool-1-thread-4] Initializing /data/images/png/MNGPAST-eightB.png: [testng] [2024-04-15 02:16:32,999] [pool-1-thread-7] Initializing /data/roger/Well B3_01.mng: [testng] [2024-04-15 02:16:35,985] [pool-1-thread-1] Initializing /data/images/png/PROM-zfil.png: [testng] [2024-04-15 02:16:36,019] [pool-1-thread-6] Initializing /data/images/Delta-gray-a8w.mng: [testng] [2024-04-15 02:16:36,085] [pool-1-thread-8] Initializing /data/images/PROM-BASN-repl.mng: [testng] [2024-04-15 02:16:36,188] [pool-1-thread-4] Initializing /data/images/png/Delta-gray-aEightB.png: [testng] [2024-04-15 02:16:36,202] [pool-1-thread-2] Initializing /data/images/png/Delta-grayOne.png: [testng] [2024-04-15 02:16:36,237] [pool-1-thread-10] Initializing /data/images/Delta-rgb-a16b.mng: [testng] [2024-04-15 02:16:36,259] [pool-1-thread-12] Initializing /data/images/MNGTERM3-4.mng: [testng] [2024-04-15 02:16:36,286] [pool-1-thread-1] Initializing /data/roger/Well C4_01.mng: [testng] [2024-04-15 02:16:39,033] [pool-1-thread-5] Initializing /data/images/png/Delta-rgb-a16w.png: [testng] [2024-04-15 02:16:39,074] [pool-1-thread-11] Initializing /data/images/PNGGxxxx.mng: [testng] [2024-04-15 02:16:39,111] [pool-1-thread-2] Initializing /data/images/Waves2.mng: [testng] [2024-04-15 02:16:39,128] [pool-1-thread-4] Initializing /data/images/png/Delta-rgb-a16b.png: [testng] [2024-04-15 02:16:39,160] [pool-1-thread-3] Initializing /data/images/I01SCRL.mng: [testng] [2024-04-15 02:16:39,198] [pool-1-thread-5] Initializing /data/images/MNGPAST_eightB.mng: [testng] [2024-04-15 02:16:39,252] [pool-1-thread-12] Initializing /data/images/australia1.mng: [testng] [2024-04-15 02:16:39,269] [pool-1-thread-6] Initializing /data/images/MNGTERM3-7.mng: [testng] [2024-04-15 02:16:39,283] [pool-1-thread-8] Initializing /data/images/PROM-BASI-zfil.mng: [testng] [2024-04-15 02:16:39,353] [pool-1-thread-4] Initializing /data/images/png/Delta-grayFour.png: [testng] [2024-04-15 02:16:39,390] [pool-1-thread-3] Initializing /data/images/Delta-gray8.mng: [testng] [2024-04-15 02:16:39,418] [pool-1-thread-2] Initializing /data/images/MNGTERM3-1.mng: [testng] [2024-04-15 02:16:39,450] [pool-1-thread-10] Initializing /data/images/home.mng: [testng] [2024-04-15 02:16:39,505] [pool-1-thread-4] Initializing /data/images/MNGPAST_eightA.mng: [testng] [2024-04-15 02:16:39,539] [pool-1-thread-5] Initializing /data/images/png/Delta-rgb-aEightW.png: [testng] [2024-04-15 02:16:39,542] [pool-1-thread-11] Initializing /data/images/png/Delta-graySixteen.png: [testng] [2024-04-15 02:16:39,596] [pool-1-thread-6] Initializing /data/images/png/Delta-rgb16.png: [testng] [2024-04-15 02:16:39,703] [pool-1-thread-12] Initializing /data/images/Delta-gray-a16w.mng: [testng] [2024-04-15 02:16:39,727] [pool-1-thread-10] Initializing /data/images/Delta-gray4.mng: [testng] [2024-04-15 02:16:39,746] [pool-1-thread-11] Initializing /data/images/MNGTERM0.mng: [testng] [2024-04-15 02:16:39,776] [pool-1-thread-2] Initializing /data/images/png/Delta-rgb-aEightB.png: [testng] [2024-04-15 02:16:39,779] [pool-1-thread-5] Initializing /data/images/PROM-BASI-repl.mng: [testng] [2024-04-15 02:16:39,814] [pool-1-thread-3] Initializing /data/images/PROM-BASN-zfil.mng: [testng] [2024-04-15 02:16:39,834] [pool-1-thread-8] Initializing /data/images/Delta-rgb-a8b.mng: [testng] [2024-04-15 02:16:39,876] [pool-1-thread-6] Initializing /data/images/png/Delta-gray-a16w.png: [testng] [2024-04-15 02:16:39,898] [pool-1-thread-4] Initializing /data/images/png/Delta-rgbEight.png: [testng] [2024-04-15 02:16:39,935] [pool-1-thread-2] Initializing /data/images/MNGPAST16b.mng: [testng] [2024-04-15 02:16:39,997] [pool-1-thread-11] Initializing /data/images/PNGFxxxx.mng: [testng] [2024-04-15 02:16:40,038] [pool-1-thread-4] Initializing /data/images/MNGTERM3-6.mng: [testng] [2024-04-15 02:16:40,050] [pool-1-thread-6] Initializing /data/images/scrollTwo.mng: [testng] [2024-04-15 02:16:40,118] [pool-1-thread-10] Initializing /data/images/buttonOne.mng: [testng] [2024-04-15 02:16:40,191] [pool-1-thread-2] Initializing /data/images/buttonTwo.mng: [testng] [2024-04-15 02:16:40,241] [pool-1-thread-12] Initializing /data/images/MNGTERM3-8.mng: [testng] [2024-04-15 02:16:40,252] [pool-1-thread-5] Initializing /data/images/Delta-gray-a16b.mng: [testng] [2024-04-15 02:16:40,283] [pool-1-thread-3] Initializing /data/images/Delta-rgbEight.mng: [testng] [2024-04-15 02:16:40,318] [pool-1-thread-8] Initializing /data/images/MNGTERM3-0.mng: [testng] [2024-04-15 02:16:40,341] [pool-1-thread-4] Initializing /data/images/Delta-rgb-a8w.mng: [testng] [2024-04-15 02:16:40,383] [pool-1-thread-10] Initializing /data/roger/Well E6_01.mng: [testng] [2024-04-15 02:16:43,149] [pool-1-thread-2] Initializing /data/images/png/Delta-grayTwo.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 4134, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 1 second Finished: SUCCESS