![[Jenkins]](/jenkins/static/695419c3/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 296 originally caused by: Started by upstream project "Trigger" build number 315 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14996101791196457749.sh + '[' zip = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46760_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:30:35,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:30:35,824 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:30:35,824 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:35,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:35,825 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:30:35,825 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:30:35,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:30:35,825 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:35,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:35,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:30:35,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:30:35,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:30:36,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:30:36,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:30:36,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:30:36,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:30:36,088 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:30:36,088 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:30:36,088 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:30:36,088 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:30:36,089 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:30:36,089 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:30:36,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-20 00:30:36,100] [main] java.version = 1.8.0_342 [testng] 00:30:36,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:30:36,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:36,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_00-30-36.log] [testng] 00:30:36,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-20 00:30:36,157] [main] testng.directory = /data [testng] [2024-12-20 00:30:36,158] [main] testng.configDirectory = /config [testng] [2024-12-20 00:30:36,170] [main] testng.multiplier = 1.0 [testng] [2024-12-20 00:30:36,171] [main] testng.in-memory = false [testng] [2024-12-20 00:30:36,171] [main] testng.allow-missing = false [testng] [2024-12-20 00:30:36,171] [main] user.language = en [testng] [2024-12-20 00:30:36,171] [main] user.country = ${user.country} [testng] [2024-12-20 00:30:36,171] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-20 00:30:36,850] [main] ---------------------------------------- [testng] [2024-12-20 00:30:36,850] [main] Total files: 22 [testng] [2024-12-20 00:30:36,850] [main] Scan time: 0.679 s (30 ms/file) [testng] [2024-12-20 00:30:36,850] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 22 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-20 00:33:11,824] [pool-1-thread-1] Initializing /data/imagej/gel-electrophoresis.zip: [testng] 00:33:11,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:33:11,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:11,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_00-33-11.log] [testng] 00:33:11,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32bed5c3 - End of configuration. [testng] [2024-12-20 00:33:16,932] [pool-1-thread-12] Initializing /data/imagej/scala-media.zip: [testng] 00:33:16,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:33:16,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:16,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_00-33-16.log] [testng] 00:33:16,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ef665b1 - End of configuration. [testng] [2024-12-20 00:33:20,353] [pool-1-thread-11] Initializing /data/imagej/xrays.zip: [testng] 00:33:20,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:33:20,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:20,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_00-33-20.log] [testng] 00:33:20,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e670c26 - End of configuration. [testng] [2024-12-20 00:33:23,948] [pool-1-thread-10] Initializing /data/imagej/RatBrain.zip: [testng] 00:33:23,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:33:23,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:23,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_00-33-23.log] [testng] 00:33:23,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d60afa2 - End of configuration. [testng] [2024-12-20 00:33:28,871] [pool-1-thread-9] Initializing /data/imagej/flybrain.zip: [testng] 00:33:28,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:33:28,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:28,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_00-33-28.log] [testng] 00:33:28,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cc61d8f - End of configuration. [testng] [2024-12-20 00:33:45,566] [pool-1-thread-8] Initializing /data/samples/sdub.zip: [testng] 00:33:45,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:33:45,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:45,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_00-33-45.log] [testng] 00:33:45,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@484e5c02 - End of configuration. [testng] [2024-12-20 00:33:46,815] [pool-1-thread-7] Initializing /data/imagej/fat-cells.zip: [testng] 00:33:46,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:33:46,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:46,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_00-33-46.log] [testng] 00:33:46,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4b5e98 - End of configuration. [testng] [2024-12-20 00:33:53,754] [pool-1-thread-6] Initializing /data/imagej/FluorescentCells.zip: [testng] 00:33:53,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:33:53,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:53,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_00-33-53.log] [testng] 00:33:53,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@687ea24e - End of configuration. [testng] [2024-12-20 00:34:02,920] [pool-1-thread-5] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: [testng] 00:34:02,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:34:02,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:02,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_00-34-02.log] [testng] 00:34:02,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b0a91fa - End of configuration. [testng] [2024-12-20 00:34:09,038] [pool-1-thread-4] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: [testng] 00:34:09,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:34:09,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:09,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_00-34-09.log] [testng] 00:34:09,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cfe2cdd - End of configuration. [testng] [2024-12-20 00:34:23,794] [pool-1-thread-3] Initializing /data/imagej/se3.zip: [testng] 00:34:23,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:34:23,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:23,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_00-34-23.log] [testng] 00:34:23,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da1e554 - End of configuration. [testng] [2024-12-20 00:34:35,432] [pool-1-thread-2] Initializing /data/imagej/mri-stack.zip: [testng] 00:34:35,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:34:35,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:35,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_00-34-35.log] [testng] 00:34:35,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@db5a10 - End of configuration. [testng] [2024-12-20 00:34:59,301] [pool-1-thread-8] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: [testng] [2024-12-20 00:35:30,503] [pool-1-thread-11] Initializing /data/imagej/blood-brain-barrier.zip: [testng] [2024-12-20 00:35:50,150] [pool-1-thread-12] Initializing /data/imagej/confocal-stack.zip: [testng] [2024-12-20 00:36:05,970] [pool-1-thread-2] Initializing /data/imagej/hela-cells.zip: [testng] [2024-12-20 00:36:12,112] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip: [testng] [2024-12-20 00:36:15,793] [pool-1-thread-6] Initializing /data/imagej/3D_Chromosome.zip: [testng] [2024-12-20 00:36:56,816] [pool-1-thread-1] Initializing /data/imagej/m51.zip: [testng] [2024-12-20 00:36:59,697] [pool-1-thread-5] Initializing /data/imagej/confocal-series.zip: [testng] [2024-12-20 00:37:16,406] [pool-1-thread-8] Initializing /data/samples/bat-cochlea-volume.zip: [testng] [2024-12-20 00:37:23,804] [pool-1-thread-10] Initializing /data/imagej/cheetah_256_8.tif.zip: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1166, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 minutes 14 seconds Finished: SUCCESS