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Started by upstream project "BIOFORMATS-test-repo" build number 296 originally caused by: Started by upstream project "Trigger" build number 315 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9334104443206806301.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46765_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:33:17,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:33:17,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:33:17,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:33:17,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:33:17,031 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:33:17,031 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:33:17,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:33:17,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:33:17,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:33:17,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:33:17,033 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:33:17,033 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:33:17,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:33:17,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:33:17,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:33:17,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:33:17,292 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:33:17,292 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:33:17,292 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:33:17,293 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:33:17,293 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:33:17,293 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:33:17,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 262 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-20 00:33:17,303] [main] java.version = 1.8.0_342 [testng] 00:33:17,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:33:17,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:17,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_00-33-17.log] [testng] 00:33:17,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-20 00:33:17,355] [main] testng.directory = /data [testng] [2024-12-20 00:33:17,355] [main] testng.configDirectory = /config [testng] [2024-12-20 00:33:17,367] [main] testng.multiplier = 1.0 [testng] [2024-12-20 00:33:17,368] [main] testng.in-memory = false [testng] [2024-12-20 00:33:17,368] [main] testng.allow-missing = false [testng] [2024-12-20 00:33:17,368] [main] user.language = en [testng] [2024-12-20 00:33:17,368] [main] user.country = ${user.country} [testng] [2024-12-20 00:33:17,368] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-20 00:38:57,833] [main] ---------------------------------------- [testng] [2024-12-20 00:38:57,833] [main] Total files: 226 [testng] [2024-12-20 00:38:57,833] [main] Scan time: 340.465 s (1506 ms/file) [testng] [2024-12-20 00:38:57,833] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-20 00:42:33,299] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL: [testng] 00:42:33,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:42:33,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:33,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_00-42-33.log] [testng] 00:42:33,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d941f5a - End of configuration. [testng] [2024-12-20 00:42:33,477] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL: [testng] 00:42:33,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:42:33,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:33,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_00-42-33.log] [testng] 00:42:33,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d5e7ee2 - End of configuration. [testng] [2024-12-20 00:42:33,619] [pool-1-thread-11] Initializing /data/iplab/Color Image.IPL: [testng] 00:42:33,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:42:33,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:33,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_00-42-33.log] [testng] 00:42:33,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b9cf9a5 - End of configuration. [testng] [2024-12-20 00:42:33,754] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.tif: [testng] 00:42:33,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:42:33,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:33,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_00-42-33.log] [testng] 00:42:33,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e9f8d3c - End of configuration. [testng] [2024-12-20 00:42:34,478] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 00:42:34,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:42:34,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:34,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_00-42-34.log] [testng] 00:42:34,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a1127b - End of configuration. [testng] [2024-12-20 00:42:35,533] [pool-1-thread-8] Initializing /data/fluoview/SpineAnimation.avi: [testng] 00:42:35,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:42:35,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:35,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_00-42-35.log] [testng] 00:42:35,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@88d4a67 - End of configuration. [testng] [2024-12-20 00:42:35,822] [pool-1-thread-7] Initializing /data/iplab/Actin.IPL: [testng] 00:42:35,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:42:35,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:35,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_00-42-35.log] [testng] 00:42:35,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c7c0cf7 - End of configuration. [testng] [2024-12-20 00:42:35,949] [pool-1-thread-6] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 00:42:35,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:42:35,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:35,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_00-42-35.log] [testng] 00:42:35,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@177ba77c - End of configuration. [testng] [2024-12-20 00:42:36,697] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 00:42:36,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:42:36,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:36,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_00-42-36.log] [testng] 00:42:36,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c5956b - End of configuration. [testng] [2024-12-20 00:42:37,352] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] 00:42:37,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:42:37,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:37,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_00-42-37.log] [testng] 00:42:37,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66161135 - End of configuration. [testng] [2024-12-20 00:42:37,456] [pool-1-thread-3] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 00:42:37,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:42:37,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:37,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_00-42-37.log] [testng] 00:42:37,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c64c854 - End of configuration. [testng] [2024-12-20 00:42:38,167] [pool-1-thread-2] Initializing /data/iplab/Chromosomes.IPL: [testng] 00:42:38,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:42:38,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:38,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_00-42-38.log] [testng] 00:42:38,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f072ffa - End of configuration. [testng] [2024-12-20 00:42:41,384] [pool-1-thread-12] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-12-20 00:42:42,037] [pool-1-thread-2] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2024-12-20 00:42:42,119] [pool-1-thread-11] Initializing /data/fluoview/Sample_XT.tif: [testng] [2024-12-20 00:42:42,725] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-12-20 00:42:43,251] [pool-1-thread-1] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-12-20 00:42:43,327] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-12-20 00:42:44,140] [pool-1-thread-8] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-12-20 00:42:45,509] [pool-1-thread-2] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2024-12-20 00:42:45,661] [pool-1-thread-1] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2024-12-20 00:42:46,801] [pool-1-thread-8] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2024-12-20 00:42:47,562] [pool-1-thread-3] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-12-20 00:42:47,671] [pool-1-thread-6] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-12-20 00:42:47,773] [pool-1-thread-5] Initializing /data/iplab/16Bit XRay.IPL: [testng] [2024-12-20 00:42:47,873] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-12-20 00:42:47,991] [pool-1-thread-10] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-12-20 00:42:48,510] [pool-1-thread-2] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 minutes 42 seconds Finished: SUCCESS