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Started by upstream project "BIOFORMATS-test-repo" build number 296 originally caused by: Started by upstream project "Trigger" build number 315 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13617595072670136781.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46780_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:53:07,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:53:07,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:53:07,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:53:07,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:53:07,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:53:07,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:53:07,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:53:07,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:53:07,966 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:53:07,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:53:07,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:53:07,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:53:08,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:53:08,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:53:08,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:53:08,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:53:08,249 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:53:08,249 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:53:08,249 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:53:08,250 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:53:08,250 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:53:08,251 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:53:08,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-20 00:53:08,261] [main] java.version = 1.8.0_342 [testng] 00:53:08,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:53:08,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:08,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_00-53-08.log] [testng] 00:53:08,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-20 00:53:08,311] [main] testng.directory = /data [testng] [2024-12-20 00:53:08,311] [main] testng.configDirectory = /config [testng] [2024-12-20 00:53:08,323] [main] testng.multiplier = 1.0 [testng] [2024-12-20 00:53:08,324] [main] testng.in-memory = false [testng] [2024-12-20 00:53:08,324] [main] testng.allow-missing = false [testng] [2024-12-20 00:53:08,324] [main] user.language = en [testng] [2024-12-20 00:53:08,324] [main] user.country = ${user.country} [testng] [2024-12-20 00:53:08,324] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-20 00:53:43,239] [main] ---------------------------------------- [testng] [2024-12-20 00:53:43,239] [main] Total files: 259 [testng] [2024-12-20 00:53:43,240] [main] Scan time: 34.915 s (134 ms/file) [testng] [2024-12-20 00:53:43,240] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-20 01:03:45,995] [pool-1-thread-1] Initializing /data/johannes/step4b.bmp: [testng] 01:03:45,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:03:45,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:45,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_01-03-45.log] [testng] 01:03:45,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@245d6bf0 - End of configuration. [testng] [2024-12-20 01:03:46,096] [pool-1-thread-12] Initializing /data/qa-17748/Image0098.oib: [testng] 01:03:46,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:03:46,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:46,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_01-03-46.log] [testng] 01:03:46,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6442952d - End of configuration. [testng] [2024-12-20 01:03:46,466] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] 01:03:46,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:03:46,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:46,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_01-03-46.log] [testng] 01:03:46,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@298d15ea - End of configuration. [testng] [2024-12-20 01:03:47,122] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] 01:03:47,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:03:47,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:47,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_01-03-47.log] [testng] 01:03:47,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@792e484c - End of configuration. [testng] [2024-12-20 01:03:47,918] [pool-1-thread-9] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 01:03:47,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:03:47,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:47,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_01-03-47.log] [testng] 01:03:47,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c8ffb1 - End of configuration. [testng] [2024-12-20 01:03:48,538] [pool-1-thread-8] Initializing /data/glen/singlesimul.oif: [testng] 01:03:48,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:03:48,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:48,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_01-03-48.log] [testng] 01:03:48,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18e08648 - End of configuration. [testng] [2024-12-20 01:03:49,270] [pool-1-thread-7] Initializing /data/molly/11OCT11.OIF: [testng] 01:03:49,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:03:49,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:49,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_01-03-49.log] [testng] 01:03:49,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45d3b177 - End of configuration. [testng] [2024-12-20 01:04:00,819] [pool-1-thread-6] Initializing /data/brian/CFP-GFP2.oib: [testng] 01:04:00,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:04:00,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:04:00,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_01-04-00.log] [testng] 01:04:00,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c76fcc9 - End of configuration. [testng] [2024-12-20 01:04:01,301] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] 01:04:01,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:04:01,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:04:01,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_01-04-01.log] [testng] 01:04:01,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b5dcf3a - End of configuration. [testng] [2024-12-20 01:04:01,690] [pool-1-thread-4] Initializing /data/molly/11OCT2.OIF: [testng] 01:04:01,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:04:01,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:04:01,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_01-04-01.log] [testng] 01:04:01,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@707d9da2 - End of configuration. [testng] [2024-12-20 01:04:17,723] [pool-1-thread-3] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 01:04:17,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:04:17,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:04:17,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_01-04-17.log] [testng] 01:04:17,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6d627f - End of configuration. [testng] [2024-12-20 01:04:18,300] [pool-1-thread-2] Initializing /data/stefan/cytosol_08b.oif: [testng] 01:04:18,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:04:18,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:04:18,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_01-04-18.log] [testng] 01:04:18,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eb2a8fe - End of configuration. [testng] [2024-12-20 01:04:25,605] [pool-1-thread-1] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-12-20 01:04:28,903] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-12-20 01:04:29,528] [pool-1-thread-5] Initializing /data/glen/notsaturated.oib: [testng] [2024-12-20 01:04:30,267] [pool-1-thread-6] Initializing /data/johannes/step5b.bmp: [testng] [2024-12-20 01:04:30,495] [pool-1-thread-9] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-12-20 01:04:31,184] [pool-1-thread-10] Initializing /data/johannes/step3.bmp: [testng] [2024-12-20 01:04:31,296] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-12-20 01:04:34,028] [pool-1-thread-10] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-12-20 01:04:34,817] [pool-1-thread-6] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-12-20 01:04:36,294] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-12-20 01:04:38,557] [pool-1-thread-11] Initializing /data/molly/11OCT10.OIF: [testng] [2024-12-20 01:04:54,122] [pool-1-thread-12] Initializing /data/glen/notsaturated.oif: [testng] [2024-12-20 01:04:56,252] [pool-1-thread-5] Initializing /data/molly/11OCT3.OIF: [testng] [2024-12-20 01:05:46,336] [pool-1-thread-9] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-12-20 01:05:50,441] [pool-1-thread-10] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-12-20 01:05:52,567] [pool-1-thread-1] Initializing /data/glen/simulstack.oif: [testng] [2024-12-20 01:05:56,270] [pool-1-thread-6] Initializing /data/aryeh/1h.oib: [testng] [2024-12-20 01:06:00,937] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-12-20 01:06:19,262] [pool-1-thread-6] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-12-20 01:06:20,132] [pool-1-thread-3] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-12-20 01:06:24,457] [pool-1-thread-8] Initializing /data/christian/20min.oif: [testng] [2024-12-20 01:06:32,944] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-12-20 01:06:38,236] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-12-20 01:06:44,917] [pool-1-thread-6] Initializing /data/david/Image0016.oib: [testng] [2024-12-20 01:06:49,895] [pool-1-thread-8] Initializing /data/glen/singleseqline.oif: [testng] [2024-12-20 01:06:50,764] [pool-1-thread-6] Initializing /data/glen/simulstack.oib: [testng] [2024-12-20 01:06:56,662] [pool-1-thread-6] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-12-20 01:06:59,065] [pool-1-thread-3] Initializing /data/chris/missegragation-15.oib: [testng] [2024-12-20 01:07:02,420] [pool-1-thread-6] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-12-20 01:07:04,217] [pool-1-thread-3] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-12-20 01:07:07,252] [pool-1-thread-6] Initializing /data/glen/111407.oif: [testng] [2024-12-20 01:07:12,179] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] [2024-12-20 01:07:39,678] [pool-1-thread-8] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-12-20 01:09:49,018] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-12-20 01:09:50,430] [pool-1-thread-9] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-12-20 01:09:55,495] [pool-1-thread-9] Initializing /data/kay/IM2pg.oib: [testng] [2024-12-20 01:10:00,518] [pool-1-thread-9] Initializing /data/glen/4205basal106072.oif: [testng] [2024-12-20 01:13:02,095] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-12-20 01:17:11,908] [pool-1-thread-12] Initializing /data/sten/01.oib: [testng] [2024-12-20 01:17:21,564] [pool-1-thread-12] Initializing /data/david/Image0016.oif: [testng] [2024-12-20 01:20:27,475] [pool-1-thread-12] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-12-20 01:20:43,023] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-12-20 01:20:57,821] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-12-20 01:21:15,730] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-12-20 01:21:20,039] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-12-20 01:21:33,530] [pool-1-thread-12] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-12-20 01:21:44,820] [pool-1-thread-12] Initializing /data/molly/11OCT9.OIF: [testng] [2024-12-20 01:26:18,854] [pool-1-thread-1] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-12-20 01:26:29,118] [pool-1-thread-1] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-12-20 01:28:58,036] [pool-1-thread-6] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-12-20 01:29:08,154] [pool-1-thread-6] Initializing /data/michael/CELL3.oib: [testng] [2024-12-20 01:29:15,796] [pool-1-thread-6] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-12-20 01:29:26,066] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-12-20 01:29:36,862] [pool-1-thread-6] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-12-20 01:29:47,088] [pool-1-thread-6] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-12-20 01:39:21,281] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-12-20 01:39:32,041] [pool-1-thread-7] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-12-20 01:39:34,227] [pool-1-thread-10] Initializing /data/johannes/step4.bmp: [testng] [2024-12-20 01:39:38,173] [pool-1-thread-10] Initializing /data/molly/11OCT7.OIF: [testng] [2024-12-20 01:40:50,136] [pool-1-thread-8] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-12-20 01:40:59,155] [pool-1-thread-8] Initializing /data/simon/never_worked.oib: [testng] [2024-12-20 01:41:07,541] [pool-1-thread-8] Initializing /data/yasunori/series_1.oib: [testng] [2024-12-20 01:41:18,074] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-12-20 01:41:24,929] [pool-1-thread-2] Initializing /data/glen/singleseqframe.oif: [testng] [2024-12-20 01:41:31,877] [pool-1-thread-7] Initializing /data/molly/11OCT6.OIF: [testng] [2024-12-20 01:42:46,013] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-12-20 01:42:56,397] [pool-1-thread-2] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-12-20 01:43:05,073] [pool-1-thread-2] Initializing /data/allan/62909#1.oib: [testng] [2024-12-20 01:43:15,016] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-12-20 01:43:26,439] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-12-20 01:43:35,822] [pool-1-thread-2] Initializing /data/brian/lambda02nm.oib: [testng] [2024-12-20 01:43:45,500] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-12-20 01:44:45,924] [pool-1-thread-2] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-12-20 01:47:24,811] [pool-1-thread-3] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-12-20 01:47:29,325] [pool-1-thread-6] Initializing /data/karl/Image0009.oib: [testng] [2024-12-20 01:47:35,438] [pool-1-thread-6] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-12-20 01:47:36,524] [pool-1-thread-3] Initializing /data/molly/11OCT5.OIF: [testng] [2024-12-20 01:48:11,136] [pool-1-thread-6] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-12-20 01:48:19,185] [pool-1-thread-6] Initializing /data/monica/Image0056.oif: [testng] [2024-12-20 01:48:34,915] [pool-1-thread-2] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-12-20 01:49:13,091] [pool-1-thread-11] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-12-20 01:49:21,511] [pool-1-thread-11] Initializing /data/yoshihito/XY.oif: [testng] [2024-12-20 01:49:26,195] [pool-1-thread-6] Initializing /data/glen/singleseqframe.oib: [testng] [2024-12-20 01:49:32,194] [pool-1-thread-6] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-12-20 01:49:58,717] [pool-1-thread-11] Initializing /data/yoshihito/XY.oib: [testng] [2024-12-20 01:50:04,930] [pool-1-thread-11] Initializing /data/glen/Null file/test change.oif: [testng] [2024-12-20 01:50:23,365] [pool-1-thread-9] Initializing /data/aryeh/control_test.oib: [testng] [2024-12-20 01:50:56,779] [pool-1-thread-9] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-12-20 01:51:02,176] [pool-1-thread-11] Initializing /data/tom/zseries-test.oib: [testng] [2024-12-20 01:51:13,221] [pool-1-thread-11] Initializing /data/simon/used_to_work.oib: [testng] [2024-12-20 01:51:21,415] [pool-1-thread-11] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-12-20 01:51:31,059] [pool-1-thread-11] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-12-20 01:51:34,273] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-12-20 01:51:40,854] [pool-1-thread-11] Initializing /data/molly/11OCT4.OIF: [testng] [2024-12-20 01:52:08,828] [pool-1-thread-1] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-12-20 01:53:07,427] [pool-1-thread-1] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-12-20 01:54:02,743] [pool-1-thread-1] Initializing /data/marc/V0606L.oib: [testng] [2024-12-20 01:54:24,520] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oib: [testng] [2024-12-20 01:54:33,430] [pool-1-thread-1] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-12-20 01:54:40,290] [pool-1-thread-1] Initializing /data/marc/V0606J.oib: [testng] [2024-12-20 01:54:52,954] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-12-20 01:54:58,402] [pool-1-thread-9] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-12-20 01:54:59,938] [pool-1-thread-1] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-12-20 01:55:04,493] [pool-1-thread-9] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-12-20 01:55:57,009] [pool-1-thread-1] Initializing /data/glen/Image0002.oif: [testng] [2024-12-20 01:56:33,760] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-12-20 01:56:41,338] [pool-1-thread-8] Initializing /data/pedro/plv-test.oib: [testng] [2024-12-20 01:56:48,401] [pool-1-thread-8] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-12-20 01:57:04,694] [pool-1-thread-8] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-12-20 01:57:15,673] [pool-1-thread-8] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-12-20 01:57:26,417] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2024-12-20 01:57:35,426] [pool-1-thread-8] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-12-20 01:57:42,373] [pool-1-thread-8] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-12-20 02:00:18,522] [pool-1-thread-4] Initializing /data/tom/RGB-1.avi: [testng] [2024-12-20 02:00:25,482] [pool-1-thread-4] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-12-20 02:00:35,359] [pool-1-thread-4] Initializing /data/jae/Image0001.oib: [testng] [2024-12-20 02:00:45,808] [pool-1-thread-4] Initializing /data/johannes/step1.bmp: [testng] [2024-12-20 02:00:49,950] [pool-1-thread-4] Initializing /data/johannes/step2.bmp: [testng] [2024-12-20 02:00:54,238] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-12-20 02:01:22,474] [pool-1-thread-2] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-12-20 02:02:05,388] [pool-1-thread-4] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-12-20 02:02:16,998] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-12-20 02:07:49,134] [pool-1-thread-10] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-12-20 02:08:01,081] [pool-1-thread-10] Initializing /data/brian/Kaede15.oib: [testng] [2024-12-20 02:08:08,052] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-12-20 02:08:11,150] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-12-20 02:08:19,655] [pool-1-thread-2] Initializing /data/glen/singlesimul.oib: [testng] [2024-12-20 02:08:21,523] [pool-1-thread-10] Initializing /data/glen/singleseqline.oib: [testng] [2024-12-20 02:08:26,681] [pool-1-thread-2] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-12-20 02:08:28,676] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-12-20 02:08:34,175] [pool-1-thread-2] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-12-20 02:08:37,977] [pool-1-thread-10] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 02:47:08,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:47:08,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:08,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_02-47-08.log] [testng] 02:47:08,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47bbc741 - End of configuration. [testng] 03:19:45,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:19:45,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:19:45,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_03-19-45.log] [testng] 03:19:45,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cab9bc5 - End of configuration. [testng] 03:56:06,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:56:06,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:06,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_03-56-06.log] [testng] 03:56:06,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e2ea169 - End of configuration. [testng] 04:02:49,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:02:49,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:02:49,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_04-02-49.log] [testng] 04:02:49,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ececd11 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 189 minutes 46 seconds Finished: SUCCESS