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Started by upstream project "BIOFORMATS-test-repo" build number 296 originally caused by: Started by upstream project "Trigger" build number 315 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins9555035315278408613.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46789_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:00:38,734 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:00:38,736 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:00:38,736 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:00:38,738 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:00:38,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:00:38,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:00:38,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:00:38,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:00:38,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:00:38,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:00:38,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:00:38,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:00:38,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:00:38,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:00:38,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:00:38,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:00:39,011 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:00:39,011 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:00:39,011 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:00:39,012 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:00:39,012 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:00:39,013 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:00:39,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 274 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-20 01:00:39,027] [main] java.version = 1.8.0_342 [testng] 01:00:39,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:00:39,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:39,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_01-00-39.log] [testng] 01:00:39,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-20 01:00:39,089] [main] testng.directory = /data [testng] [2024-12-20 01:00:39,089] [main] testng.configDirectory = /config [testng] [2024-12-20 01:00:39,101] [main] testng.multiplier = 1.0 [testng] [2024-12-20 01:00:39,102] [main] testng.in-memory = false [testng] [2024-12-20 01:00:39,102] [main] testng.allow-missing = false [testng] [2024-12-20 01:00:39,102] [main] user.language = en [testng] [2024-12-20 01:00:39,102] [main] user.country = ${user.country} [testng] [2024-12-20 01:00:39,102] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-20 01:00:39,748] [main] ---------------------------------------- [testng] [2024-12-20 01:00:39,748] [main] Total files: 25 [testng] [2024-12-20 01:00:39,748] [main] Scan time: 0.646 s (25 ms/file) [testng] [2024-12-20 01:00:39,749] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-20 01:00:44,910] [pool-1-thread-1] Initializing /data/jqd/mireSixteen.pict: [testng] 01:00:44,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:00:44,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:44,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_01-00-44.log] [testng] 01:00:44,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62194636 - End of configuration. [testng] [2024-12-20 01:00:45,041] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:00:45,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:00:45,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_01-00-45.log] [testng] 01:00:45,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74932b06 - End of configuration. [testng] [2024-12-20 01:00:45,152] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:00:45,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:00:45,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_01-00-45.log] [testng] 01:00:45,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47e86c9c - End of configuration. [testng] [2024-12-20 01:00:45,263] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 01:00:45,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:00:45,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_01-00-45.log] [testng] 01:00:45,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cee035f - End of configuration. [testng] [2024-12-20 01:00:45,362] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 01:00:45,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:00:45,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_01-00-45.log] [testng] 01:00:45,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f873769 - End of configuration. [testng] [2024-12-20 01:00:45,461] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:00:45,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:00:45,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_01-00-45.log] [testng] 01:00:45,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462bf57d - End of configuration. [testng] [2024-12-20 01:00:45,551] [pool-1-thread-7] Initializing /data/misc/planet.png: [testng] 01:00:45,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:00:45,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_01-00-45.log] [testng] 01:00:45,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2826bee5 - End of configuration. [testng] [2024-12-20 01:00:45,565] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict: [testng] 01:00:45,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:00:45,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_01-00-45.log] [testng] 01:00:45,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@743966a4 - End of configuration. [testng] [2024-12-20 01:00:45,650] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 01:00:45,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:00:45,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_01-00-45.log] [testng] 01:00:45,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@adf987f - End of configuration. [testng] [2024-12-20 01:00:45,720] [pool-1-thread-4] Initializing /data/brian/images/RED.PCT: [testng] 01:00:45,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:00:45,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_01-00-45.log] [testng] 01:00:45,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eaacac2 - End of configuration. [testng] [2024-12-20 01:00:45,799] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 01:00:45,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:00:45,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_01-00-45.log] [testng] 01:00:45,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d5f67ba - End of configuration. [testng] [2024-12-20 01:00:45,908] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:00:45,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:00:45,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:45,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_01-00-45.log] [testng] 01:00:45,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51dcaa25 - End of configuration. [testng] [2024-12-20 01:00:47,992] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-12-20 01:00:49,386] [pool-1-thread-1] Initializing /data/brian/images/BLK.PCT: [testng] [2024-12-20 01:00:49,747] [pool-1-thread-5] Initializing /data/misc/planet2.pict: [testng] [2024-12-20 01:00:50,598] [pool-1-thread-8] Initializing /data/jqd/32bit.pict: [testng] [2024-12-20 01:00:51,880] [pool-1-thread-11] Initializing /data/misc/swlogo.pict: [testng] [2024-12-20 01:00:52,730] [pool-1-thread-3] Initializing /data/jqd/mire32.pict: [testng] [2024-12-20 01:00:53,091] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-12-20 01:00:53,617] [pool-1-thread-4] Initializing /data/brian/images/YEL.PCT: [testng] [2024-12-20 01:00:53,907] [pool-1-thread-9] Initializing /data/misc/planet.pict: [testng] [2024-12-20 01:00:54,264] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct: [testng] [2024-12-20 01:00:54,570] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-12-20 01:00:54,727] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: [testng] [2024-12-20 01:00:58,040] [pool-1-thread-7] Initializing /data/brian/images/TRU256.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 26 seconds Finished: SUCCESS