![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 296 originally caused by: Started by upstream project "Trigger" build number 315 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1089650551689443602.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46867_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:33:22,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:33:22,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:33:22,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:33:22,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:33:22,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:33:22,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:33:22,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:33:22,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:33:22,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:33:22,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:33:22,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:33:22,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:33:22,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:33:22,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:33:22,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:33:22,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:33:22,571 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:33:22,572 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:33:22,572 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:33:22,572 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:33:22,572 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:33:22,573 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:33:22,573 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-20 04:33:22,582] [main] java.version = 1.8.0_342 [testng] 04:33:22,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:33:22,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:22,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_04-33-22.log] [testng] 04:33:22,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-20 04:33:22,631] [main] testng.directory = /data [testng] [2024-12-20 04:33:22,631] [main] testng.configDirectory = /config [testng] [2024-12-20 04:33:22,642] [main] testng.multiplier = 1.0 [testng] [2024-12-20 04:33:22,642] [main] testng.in-memory = false [testng] [2024-12-20 04:33:22,642] [main] testng.allow-missing = false [testng] [2024-12-20 04:33:22,642] [main] user.language = en [testng] [2024-12-20 04:33:22,642] [main] user.country = ${user.country} [testng] [2024-12-20 04:33:22,642] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-20 04:37:13,034] [main] ---------------------------------------- [testng] [2024-12-20 04:37:13,034] [main] Total files: 15735 [testng] [2024-12-20 04:37:13,034] [main] Scan time: 230.392 s (14 ms/file) [testng] [2024-12-20 04:37:13,034] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-20 04:40:27,130] [pool-1-thread-1] Initializing /data/converted/converted/damian-compressed.tif: [testng] 04:40:27,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:40:27,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:27,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_04-40-27.log] [testng] 04:40:27,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e03b59c - End of configuration. [testng] [2024-12-20 04:40:28,588] [pool-1-thread-12] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] 04:40:28,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:40:28,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:28,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_04-40-28.log] [testng] 04:40:28,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53d8aa75 - End of configuration. [testng] [2024-12-20 04:40:31,220] [pool-1-thread-11] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] 04:40:31,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:40:31,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:31,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_04-40-31.log] [testng] 04:40:31,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b9b1509 - End of configuration. [testng] [2024-12-20 04:40:32,791] [pool-1-thread-10] Initializing /data/converted/karsten/Bild1.tif: [testng] 04:40:32,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:40:32,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:32,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_04-40-32.log] [testng] 04:40:32,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15f66778 - End of configuration. [testng] [2024-12-20 04:40:33,823] [pool-1-thread-9] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 04:40:33,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:40:33,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:33,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_04-40-33.log] [testng] 04:40:33,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a20a958 - End of configuration. [testng] [2024-12-20 04:40:34,906] [pool-1-thread-8] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] 04:40:34,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:40:34,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:34,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_04-40-34.log] [testng] 04:40:34,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e9fe6d - End of configuration. [testng] [2024-12-20 04:40:35,809] [pool-1-thread-7] Initializing /data/converted/darren/section0002_w1.tif: [testng] 04:40:35,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:40:35,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:35,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_04-40-35.log] [testng] 04:40:35,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fab2c71 - End of configuration. [testng] [2024-12-20 04:40:37,513] [pool-1-thread-6] Initializing /data/scott/Slide133-04.tif: [testng] 04:40:37,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:40:37,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:37,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_04-40-37.log] [testng] 04:40:37,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f80a9fb - End of configuration. [testng] [2024-12-20 04:40:39,814] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] 04:40:39,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:40:39,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:39,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_04-40-39.log] [testng] 04:40:39,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4685e566 - End of configuration. [testng] [2024-12-20 04:40:41,389] [pool-1-thread-4] Initializing /data/converted/lior/live+cf5b.tif: [testng] 04:40:41,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:40:41,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:41,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_04-40-41.log] [testng] 04:40:41,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f8f9082 - End of configuration. [testng] [2024-12-20 04:40:42,335] [pool-1-thread-3] Initializing /data/converted/karsten/Bild2.tif: [testng] 04:40:42,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:40:42,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:42,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_04-40-42.log] [testng] 04:40:42,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f727db7 - End of configuration. [testng] [2024-12-20 04:40:43,298] [pool-1-thread-2] Initializing /data/converted/converted/2chz.tif: [testng] 04:40:43,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:40:43,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:40:43,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_04-40-43.log] [testng] 04:40:43,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1742b6b0 - End of configuration. [testng] [2024-12-20 04:41:13,167] [pool-1-thread-1] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-20 04:41:20,995] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-12-20 04:41:22,990] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-12-20 04:41:25,154] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-20 04:41:29,485] [pool-1-thread-3] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-20 04:41:32,519] [pool-1-thread-10] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-12-20 04:41:41,583] [pool-1-thread-4] Initializing /data/converted/michel/d.tif: [testng] [2024-12-20 04:41:43,319] [pool-1-thread-8] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-12-20 04:41:55,276] [pool-1-thread-11] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-20 04:42:22,973] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-12-20 04:42:53,745] [pool-1-thread-10] Initializing /data/scott/Slide133-01.tif: [testng] [2024-12-20 04:42:55,567] [pool-1-thread-4] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-20 04:43:31,369] [pool-1-thread-10] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-12-20 04:44:09,913] [pool-1-thread-10] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-12-20 04:44:46,847] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-20 04:44:49,211] [pool-1-thread-10] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-12-20 04:45:04,840] [pool-1-thread-10] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-20 04:45:47,859] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-20 04:46:55,589] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-20 04:50:52,884] [pool-1-thread-2] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-20 04:50:57,670] [pool-1-thread-5] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-20 04:51:27,436] [pool-1-thread-5] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-20 04:51:36,050] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-20 04:51:38,320] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-20 04:51:49,306] [pool-1-thread-7] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-12-20 04:53:45,886] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-12-20 04:54:21,797] [pool-1-thread-7] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-12-20 04:54:47,352] [pool-1-thread-3] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-12-20 04:55:04,591] [pool-1-thread-7] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-12-20 04:55:25,076] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-12-20 04:56:13,135] [pool-1-thread-6] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-20 04:56:17,425] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-12-20 04:59:05,577] [pool-1-thread-6] Initializing /data/converted/converted/damian.tif: [testng] [2024-12-20 04:59:50,720] [pool-1-thread-6] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-20 05:03:24,084] [pool-1-thread-2] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-12-20 05:03:27,042] [pool-1-thread-6] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-12-20 05:04:07,987] [pool-1-thread-2] Initializing /data/scott/Slide133-08.tif: [testng] [2024-12-20 05:04:10,887] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-20 05:04:14,435] [pool-1-thread-12] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-12-20 05:04:40,089] [pool-1-thread-4] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-20 05:05:02,615] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-20 05:05:30,482] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-20 05:08:16,852] [pool-1-thread-12] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-12-20 05:10:19,485] [pool-1-thread-10] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-20 05:10:35,270] [pool-1-thread-3] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-12-20 05:11:17,938] [pool-1-thread-10] Initializing /data/converted/michel/c.tif: [testng] [2024-12-20 05:12:26,413] [pool-1-thread-10] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-20 05:12:57,900] [pool-1-thread-2] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-12-20 05:13:19,667] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-20 05:15:07,932] [pool-1-thread-12] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-12-20 05:15:12,973] [pool-1-thread-9] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-20 05:16:42,350] [pool-1-thread-4] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-12-20 05:18:17,153] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-20 05:19:26,880] [pool-1-thread-6] Initializing /data/converted/dietmar/138.tif: [testng] [2024-12-20 05:19:33,895] [pool-1-thread-11] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-12-20 05:20:29,348] [pool-1-thread-11] Initializing /data/converted/sebastien/test.tif: [testng] [2024-12-20 05:23:39,502] [pool-1-thread-8] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-20 05:24:56,752] [pool-1-thread-2] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-20 05:27:56,594] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-20 05:28:03,608] [pool-1-thread-10] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-20 05:29:17,888] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-20 05:29:24,532] [pool-1-thread-3] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-20 05:31:44,529] [pool-1-thread-4] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-20 05:32:56,435] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-20 05:33:11,441] [pool-1-thread-6] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-20 05:35:55,188] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-20 05:36:20,266] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-12-20 05:41:04,356] [pool-1-thread-6] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-12-20 05:41:53,521] [pool-1-thread-6] Initializing /data/converted/michel/b.tif: [testng] [2024-12-20 05:42:25,118] [pool-1-thread-8] Initializing /data/converted/michel/e.tif: [testng] [2024-12-20 05:42:56,689] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-20 05:43:13,152] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-20 05:43:59,277] [pool-1-thread-8] Initializing /data/scott/Slide133-11.tif: [testng] [2024-12-20 05:44:44,674] [pool-1-thread-8] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-12-20 05:45:24,315] [pool-1-thread-8] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-12-20 05:46:18,289] [pool-1-thread-8] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-12-20 05:46:21,828] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-20 05:47:03,466] [pool-1-thread-4] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-20 05:47:43,803] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-12-20 05:48:56,494] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-12-20 05:49:20,616] [pool-1-thread-1] Initializing /data/converted/nicolas/image.tif: [testng] [2024-12-20 05:50:02,423] [pool-1-thread-1] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-12-20 05:50:18,304] [pool-1-thread-11] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-20 05:50:49,906] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-20 05:51:19,609] [pool-1-thread-11] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-20 05:52:11,346] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-12-20 05:52:17,423] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-20 05:52:34,060] [pool-1-thread-8] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-12-20 05:53:37,735] [pool-1-thread-8] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-20 05:54:25,587] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-12-20 05:55:34,237] [pool-1-thread-2] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-20 05:56:17,338] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-12-20 05:56:32,968] [pool-1-thread-4] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-20 05:56:44,343] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-20 05:56:50,270] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-20 05:57:40,217] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-12-20 06:03:56,851] [pool-1-thread-9] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-12-20 06:05:11,126] [pool-1-thread-11] Initializing /data/converted/michel/a.tif: [testng] [2024-12-20 06:05:43,359] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-12-20 06:05:48,789] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-12-20 06:06:10,873] [pool-1-thread-10] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-20 06:06:33,927] [pool-1-thread-1] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-12-20 06:06:39,416] [pool-1-thread-3] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-12-20 06:08:34,784] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-12-20 06:08:46,586] [pool-1-thread-4] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-12-20 06:08:51,893] [pool-1-thread-6] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-20 06:12:32,476] [pool-1-thread-4] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-20 06:13:11,242] [pool-1-thread-8] Initializing /data/othmar/mozaic.tif: [testng] [2024-12-20 06:14:41,278] [pool-1-thread-12] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-12-20 06:15:19,725] [pool-1-thread-12] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-20 06:15:32,193] [pool-1-thread-1] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-20 06:16:00,701] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-20 06:16:10,201] [pool-1-thread-11] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 06:24:48,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:24:48,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:24:48,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_06-24-48.log] [testng] 06:24:48,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@165a51d8 - End of configuration. [testng] 07:00:46,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:00:46,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:46,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_07-00-46.log] [testng] 07:00:46,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37aa20f2 - End of configuration. [testng] 07:04:21,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:04:21,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:04:21,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_07-04-21.log] [testng] 07:04:21,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef8cf89 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 151 minutes 4 seconds Finished: SUCCESS