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Started by upstream project "BIOFORMATS-test-repo" build number 296 originally caused by: Started by upstream project "Trigger" build number 315 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins16135634117990587311.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46871_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:04:15,981 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:04:15,982 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 05:04:15,982 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:04:15,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:04:15,983 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:04:15,984 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:04:15,984 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:04:15,984 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:04:15,984 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:04:15,985 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:04:15,985 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:04:15,985 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:04:16,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:04:16,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:04:16,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:04:16,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:04:16,249 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:04:16,249 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:04:16,249 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:04:16,250 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:04:16,250 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 05:04:16,251 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 05:04:16,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-20 05:04:16,261] [main] java.version = 1.8.0_342 [testng] 05:04:16,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:04:16,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:16,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_05-04-16.log] [testng] 05:04:16,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-20 05:04:16,315] [main] testng.directory = /data [testng] [2024-12-20 05:04:16,315] [main] testng.configDirectory = /config [testng] [2024-12-20 05:04:16,327] [main] testng.multiplier = 1.0 [testng] [2024-12-20 05:04:16,328] [main] testng.in-memory = false [testng] [2024-12-20 05:04:16,328] [main] testng.allow-missing = false [testng] [2024-12-20 05:04:16,328] [main] user.language = en [testng] [2024-12-20 05:04:16,328] [main] user.country = ${user.country} [testng] [2024-12-20 05:04:16,328] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-20 05:04:17,302] [main] ---------------------------------------- [testng] [2024-12-20 05:04:17,302] [main] Total files: 18 [testng] [2024-12-20 05:04:17,302] [main] Scan time: 0.974 s (54 ms/file) [testng] [2024-12-20 05:04:17,302] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-20 05:04:34,328] [pool-1-thread-1] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 05:04:34,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:04:34,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:34,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_05-04-34.log] [testng] 05:04:34,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a452bb - End of configuration. [testng] [2024-12-20 05:04:35,182] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] 05:04:35,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:04:35,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:35,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_05-04-35.log] [testng] 05:04:35,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7518d72 - End of configuration. [testng] [2024-12-20 05:04:35,945] [pool-1-thread-11] Initializing /data/misc/venus_composite_8bit.psd: [testng] 05:04:35,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:04:35,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:35,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_05-04-35.log] [testng] 05:04:35,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5653e1e - End of configuration. [testng] [2024-12-20 05:04:36,658] [pool-1-thread-10] Initializing /data/misc/smilie.psd: [testng] 05:04:36,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:04:36,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:36,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_05-04-36.log] [testng] 05:04:36,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55fb0416 - End of configuration. [testng] [2024-12-20 05:04:37,447] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 05:04:37,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:04:37,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:37,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_05-04-37.log] [testng] 05:04:37,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e21241f - End of configuration. [testng] [2024-12-20 05:04:38,208] [pool-1-thread-8] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 05:04:38,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:04:38,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:38,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_05-04-38.log] [testng] 05:04:38,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a953bf4 - End of configuration. [testng] [2024-12-20 05:04:38,925] [pool-1-thread-7] Initializing /data/ascb/607x.psd: [testng] 05:04:38,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:04:38,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:38,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_05-04-38.log] [testng] 05:04:38,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@421e651e - End of configuration. [testng] [2024-12-20 05:04:39,699] [pool-1-thread-6] Initializing /data/cris/house.tif: [testng] 05:04:39,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:04:39,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:39,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_05-04-39.log] [testng] 05:04:39,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@157ae2c6 - End of configuration. [testng] [2024-12-20 05:04:42,305] [pool-1-thread-5] Initializing /data/ascb/423.psd: [testng] 05:04:42,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:04:42,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:42,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_05-04-42.log] [testng] 05:04:42,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dd76a7c - End of configuration. [testng] [2024-12-20 05:04:43,054] [pool-1-thread-4] Initializing /data/simon/colour_separated_image.psd: [testng] 05:04:43,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:04:43,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:43,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_05-04-43.log] [testng] 05:04:43,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4973cca5 - End of configuration. [testng] [2024-12-20 05:04:43,855] [pool-1-thread-3] Initializing /data/misc/glossy_buttons.psd: [testng] 05:04:43,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:04:43,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:43,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_05-04-43.log] [testng] 05:04:43,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45879342 - End of configuration. [testng] [2024-12-20 05:04:44,628] [pool-1-thread-2] Initializing /data/misc/glossy_orbs.psd: [testng] 05:04:44,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:04:44,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:44,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_05-04-44.log] [testng] 05:04:44,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c5c2c2 - End of configuration. [testng] [2024-12-20 05:04:53,441] [pool-1-thread-2] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2024-12-20 05:04:54,169] [pool-1-thread-4] Initializing /data/misc/venus_composite.psd: [testng] [2024-12-20 05:04:54,990] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-12-20 05:04:55,940] [pool-1-thread-10] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [2024-12-20 05:04:56,890] [pool-1-thread-12] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] [2024-12-20 05:04:57,702] [pool-1-thread-3] Initializing /data/big-images/8kx8k.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 3 seconds Finished: SUCCESS