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Started by upstream project "BIOFORMATS-test-repo" build number 296 originally caused by: Started by upstream project "Trigger" build number 315 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15712359431635681931.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46894_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:19:29,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:19:29,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 06:19:29,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:19:29,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:19:29,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:19:29,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:19:29,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:19:29,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:19:29,675 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:19:29,675 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:19:29,675 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:19:29,675 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:19:29,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:19:29,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:19:29,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:19:29,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:19:29,928 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:19:29,928 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:19:29,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:19:29,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:19:29,928 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 06:19:29,929 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 06:19:29,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-20 06:19:29,939] [main] java.version = 1.8.0_342 [testng] 06:19:29,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:19:29,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:29,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_06-19-29.log] [testng] 06:19:29,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-20 06:19:29,992] [main] testng.directory = /data [testng] [2024-12-20 06:19:29,992] [main] testng.configDirectory = /config [testng] [2024-12-20 06:19:30,004] [main] testng.multiplier = 1.0 [testng] [2024-12-20 06:19:30,005] [main] testng.in-memory = false [testng] [2024-12-20 06:19:30,005] [main] testng.allow-missing = false [testng] [2024-12-20 06:19:30,005] [main] user.language = en [testng] [2024-12-20 06:19:30,005] [main] user.country = ${user.country} [testng] [2024-12-20 06:19:30,005] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-20 06:19:55,687] [main] ---------------------------------------- [testng] [2024-12-20 06:19:55,687] [main] Total files: 31 [testng] [2024-12-20 06:19:55,688] [main] Scan time: 25.682 s (828 ms/file) [testng] [2024-12-20 06:19:55,688] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-20 06:20:28,285] [pool-1-thread-1] Initializing /data/venu/Multichannel 3a.jpg: [testng] 06:20:28,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:20:28,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:28,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_06-20-28.log] [testng] 06:20:28,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c192044 - End of configuration. [testng] [2024-12-20 06:20:28,538] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jbig: [testng] 06:20:28,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:20:28,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:28,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_06-20-28.log] [testng] 06:20:28,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@318fd448 - End of configuration. [testng] [2024-12-20 06:20:30,678] [pool-1-thread-11] Initializing /data/vikram/Captured 3.jp2: [testng] 06:20:30,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:20:30,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:30,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_06-20-30.log] [testng] 06:20:30,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c9c5cc4 - End of configuration. [testng] [2024-12-20 06:20:31,567] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] 06:20:31,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:20:31,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:31,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_06-20-31.log] [testng] 06:20:31,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa2da3c - End of configuration. [testng] [2024-12-20 06:20:32,458] [pool-1-thread-9] Initializing /data/big-images/8kx8k.jpf: [testng] 06:20:32,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:20:32,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:32,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_06-20-32.log] [testng] 06:20:32,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aa4a2b6 - End of configuration. [testng] [2024-12-20 06:20:33,331] [pool-1-thread-8] Initializing /data/vikram/Captured 1.jp2: [testng] 06:20:33,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:20:33,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:33,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_06-20-33.log] [testng] 06:20:33,332 |-INFO in ch.qos.logback.core.sift.SiftProcessor@304222a0 - End of configuration. [testng] [2024-12-20 06:20:34,320] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jp2: [testng] 06:20:34,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:20:34,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:34,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_06-20-34.log] [testng] 06:20:34,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@317f1b94 - End of configuration. [testng] [2024-12-20 06:20:35,225] [pool-1-thread-6] Initializing /data/david/multichannel-2d test.jp2: [testng] 06:20:35,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:20:35,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:35,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_06-20-35.log] [testng] 06:20:35,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61d9c941 - End of configuration. [testng] [2024-12-20 06:20:36,097] [pool-1-thread-5] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 06:20:36,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:20:36,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:36,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_06-20-36.log] [testng] 06:20:36,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11f391ae - End of configuration. [testng] [2024-12-20 06:20:38,227] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 06:20:38,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:20:38,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:38,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_06-20-38.log] [testng] 06:20:38,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28948a32 - End of configuration. [testng] [2024-12-20 06:20:39,064] [pool-1-thread-3] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 06:20:39,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:20:39,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:39,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_06-20-39.log] [testng] 06:20:39,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4004581a - End of configuration. [testng] [2024-12-20 06:20:39,917] [pool-1-thread-2] Initializing /data/vikram/Captured 5.jp2: [testng] 06:20:39,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:20:39,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:20:39,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_06-20-39.log] [testng] 06:20:39,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82bf8a8 - End of configuration. [testng] [2024-12-20 06:20:47,917] [pool-1-thread-1] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-12-20 06:20:49,729] [pool-1-thread-7] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-12-20 06:20:50,656] [pool-1-thread-11] Initializing /data/david/cy5-tph.jp2: [testng] [2024-12-20 06:20:51,738] [pool-1-thread-8] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-12-20 06:20:52,958] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-12-20 06:20:55,558] [pool-1-thread-12] Initializing /data/kraig/head.jp2: [testng] [2024-12-20 06:20:56,946] [pool-1-thread-5] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-12-20 06:20:58,076] [pool-1-thread-3] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-12-20 06:20:59,155] [pool-1-thread-10] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-12-20 06:21:00,312] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-12-20 06:21:04,069] [pool-1-thread-4] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-12-20 06:21:05,835] [pool-1-thread-8] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-12-20 06:21:09,103] [pool-1-thread-12] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-12-20 06:21:15,363] [pool-1-thread-5] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-12-20 06:21:16,720] [pool-1-thread-7] Initializing /data/david/000000_000001.jpx: [testng] [2024-12-20 06:21:22,672] [pool-1-thread-3] Initializing /data/frans/flower.jp2: [testng] [2024-12-20 06:21:25,164] [pool-1-thread-12] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-12-20 06:21:26,124] [pool-1-thread-5] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 10 seconds Finished: SUCCESS