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Started by upstream project "BIOFORMATS-test-repo" build number 296 originally caused by: Started by upstream project "Trigger" build number 315 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins12329791401480588577.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46896_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:22:29,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:22:29,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 06:22:29,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:22:29,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:22:29,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:22:29,339 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:22:29,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:22:29,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:22:29,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:22:29,340 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:22:29,340 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:22:29,341 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:22:29,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:22:29,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:22:29,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:22:29,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:22:29,606 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:22:29,606 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:22:29,606 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:22:29,606 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:22:29,606 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 06:22:29,607 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 06:22:29,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-20 06:22:29,617] [main] java.version = 1.8.0_342 [testng] 06:22:29,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:22:29,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:22:29,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_06-22-29.log] [testng] 06:22:29,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-20 06:22:29,672] [main] testng.directory = /data [testng] [2024-12-20 06:22:29,673] [main] testng.configDirectory = /config [testng] [2024-12-20 06:22:29,685] [main] testng.multiplier = 1.0 [testng] [2024-12-20 06:22:29,685] [main] testng.in-memory = false [testng] [2024-12-20 06:22:29,685] [main] testng.allow-missing = false [testng] [2024-12-20 06:22:29,685] [main] user.language = en [testng] [2024-12-20 06:22:29,685] [main] user.country = ${user.country} [testng] [2024-12-20 06:22:29,685] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-20 06:22:36,499] [main] ---------------------------------------- [testng] [2024-12-20 06:22:36,499] [main] Total files: 22 [testng] [2024-12-20 06:22:36,499] [main] Scan time: 6.814 s (309 ms/file) [testng] [2024-12-20 06:22:36,499] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-20 06:23:05,999] [pool-1-thread-1] Initializing /data/converted/dub01.ipw: [testng] 06:23:05,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:23:06,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:06,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_06-23-06.log] [testng] 06:23:06,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48dc13ca - End of configuration. [testng] [2024-12-20 06:23:06,829] [pool-1-thread-12] Initializing /data/samples/HEART.SEQ: [testng] 06:23:06,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:23:06,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:06,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_06-23-06.log] [testng] 06:23:06,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cff6066 - End of configuration. [testng] [2024-12-20 06:23:07,688] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 06:23:07,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:23:07,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:07,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_06-23-07.log] [testng] 06:23:07,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f01c0f - End of configuration. [testng] [2024-12-20 06:23:08,431] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw: [testng] 06:23:08,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:23:08,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:08,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_06-23-08.log] [testng] 06:23:08,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e044654 - End of configuration. [testng] [2024-12-20 06:23:09,208] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 06:23:09,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:23:09,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:09,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_06-23-09.log] [testng] 06:23:09,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d72adc5 - End of configuration. [testng] [2024-12-20 06:23:10,085] [pool-1-thread-8] Initializing /data/converted/clown.seq: [testng] 06:23:10,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:23:10,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:10,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_06-23-10.log] [testng] 06:23:10,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@576b3864 - End of configuration. [testng] [2024-12-20 06:23:10,911] [pool-1-thread-7] Initializing /data/xiuwen/head2.seq: [testng] 06:23:10,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:23:10,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:10,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_06-23-10.log] [testng] 06:23:10,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c10f9e3 - End of configuration. [testng] [2024-12-20 06:23:11,788] [pool-1-thread-6] Initializing /data/converted/dub01.seq: [testng] 06:23:11,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:23:11,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:11,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_06-23-11.log] [testng] 06:23:11,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c436ad - End of configuration. [testng] [2024-12-20 06:23:12,701] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 06:23:12,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:23:12,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:12,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_06-23-12.log] [testng] 06:23:12,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e5c40f3 - End of configuration. [testng] [2024-12-20 06:23:14,630] [pool-1-thread-4] Initializing /data/converted/clown8c.tif: [testng] 06:23:14,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:23:14,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:14,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_06-23-14.log] [testng] 06:23:14,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78059d46 - End of configuration. [testng] [2024-12-20 06:23:16,534] [pool-1-thread-3] Initializing /data/converted/mitosis-test.seq: [testng] 06:23:16,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:23:16,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:16,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_06-23-16.log] [testng] 06:23:16,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764d314d - End of configuration. [testng] [2024-12-20 06:23:17,344] [pool-1-thread-2] Initializing /data/alex/AFAset0003.ips: [testng] 06:23:17,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:23:17,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:23:17,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_06-23-17.log] [testng] 06:23:17,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b4376b - End of configuration. [testng] [2024-12-20 06:23:25,895] [pool-1-thread-10] Initializing /data/converted/clown.ipw: [testng] [2024-12-20 06:23:26,668] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF: [testng] [2024-12-20 06:23:27,532] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: [testng] [2024-12-20 06:23:28,363] [pool-1-thread-3] Initializing /data/converted/clown.tif: [testng] [2024-12-20 06:23:29,203] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF: [testng] [2024-12-20 06:23:31,188] [pool-1-thread-6] Initializing /data/converted/mitosis-test.tif: [testng] [2024-12-20 06:23:33,260] [pool-1-thread-11] Initializing /data/converted/dub01.pic: [testng] [2024-12-20 06:23:34,066] [pool-1-thread-9] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-12-20 06:23:36,469] [pool-1-thread-7] Initializing /data/samples/FLDUAL.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 24 seconds Finished: SUCCESS