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Started by upstream project "BIOFORMATS-test-repo" build number 297 originally caused by: Started by upstream project "Trigger" build number 319 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins16796609529519624861.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46988_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml compile-tests: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:50:42,541 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:50:42,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:50:42,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:50:42,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:50:42,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:50:42,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:50:42,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:50:42,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:50:42,545 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:50:42,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:50:42,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:50:42,545 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:50:42,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:50:42,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:50:42,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:50:42,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:50:42,802 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:50:42,802 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:50:42,802 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:50:42,802 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:50:42,802 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:50:42,803 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:50:42,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-24 01:50:42,813] [main] java.version = 1.8.0_342 [testng] 01:50:42,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:50:42,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:42,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-24_01-50-42.log] [testng] 01:50:42,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-24 01:50:42,864] [main] testng.directory = /data [testng] [2024-12-24 01:50:42,864] [main] testng.configDirectory = /config [testng] [2024-12-24 01:50:42,876] [main] testng.multiplier = 1.0 [testng] [2024-12-24 01:50:42,876] [main] testng.in-memory = false [testng] [2024-12-24 01:50:42,876] [main] testng.allow-missing = false [testng] [2024-12-24 01:50:42,876] [main] user.language = en [testng] [2024-12-24 01:50:42,876] [main] user.country = ${user.country} [testng] [2024-12-24 01:50:42,876] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-24 02:03:18,729] [main] ---------------------------------------- [testng] [2024-12-24 02:03:18,729] [main] Total files: 7329 [testng] [2024-12-24 02:03:18,729] [main] Scan time: 755.853 s (103 ms/file) [testng] [2024-12-24 02:03:18,729] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-24 02:14:41,832] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 02:14:41,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:14:41,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:41,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-24_02-14-41.log] [testng] 02:14:41,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7334ca5b - End of configuration. [testng] [2024-12-24 02:14:44,456] [pool-1-thread-12] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 02:14:44,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:14:44,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:44,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-24_02-14-44.log] [testng] 02:14:44,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ba0798 - End of configuration. [testng] [2024-12-24 02:14:47,617] [pool-1-thread-11] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] 02:14:47,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:14:47,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:47,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-24_02-14-47.log] [testng] 02:14:47,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7365f56a - End of configuration. [testng] [2024-12-24 02:14:49,567] [pool-1-thread-10] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] 02:14:49,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:14:49,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:49,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-24_02-14-49.log] [testng] 02:14:49,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68283a14 - End of configuration. [testng] [2024-12-24 02:14:51,749] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] 02:14:51,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:14:51,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:51,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-24_02-14-51.log] [testng] 02:14:51,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df99b55 - End of configuration. [testng] [2024-12-24 02:14:54,790] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] 02:14:54,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:14:54,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:54,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-24_02-14-54.log] [testng] 02:14:54,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f99f990 - End of configuration. [testng] [2024-12-24 02:14:57,376] [pool-1-thread-8] Used files list does not include base file [testng] [2024-12-24 02:14:57,378] [pool-1-thread-7] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:14:57,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:14:57,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:57,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-24_02-14-57.log] [testng] 02:14:57,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d25e5d4 - End of configuration. [testng] [2024-12-24 02:14:59,446] [pool-1-thread-6] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 02:14:59,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:14:59,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:59,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-24_02-14-59.log] [testng] 02:14:59,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c8df69 - End of configuration. [testng] [2024-12-24 02:15:01,870] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] 02:15:01,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:15:01,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:01,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-24_02-15-01.log] [testng] 02:15:01,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@383308cc - End of configuration. [testng] [2024-12-24 02:15:04,643] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] 02:15:04,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:15:04,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:04,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-24_02-15-04.log] [testng] 02:15:04,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a879423 - End of configuration. [testng] [2024-12-24 02:15:12,490] [pool-1-thread-3] Initializing /data/josh/2101to600b.stk: [testng] 02:15:12,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:15:12,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:12,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-24_02-15-12.log] [testng] 02:15:12,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35c45b36 - End of configuration. [testng] [2024-12-24 02:15:27,062] [pool-1-thread-2] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] 02:15:27,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:15:27,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:27,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-24_02-15-27.log] [testng] 02:15:27,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21b5ac05 - End of configuration. [testng] [2024-12-24 02:15:46,559] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-24 02:15:50,183] [pool-1-thread-7] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-12-24 02:15:55,464] [pool-1-thread-9] Initializing /data/qa-16915/m-04.tif: [testng] [2024-12-24 02:16:01,599] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-12-24 02:16:04,576] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-12-24 02:16:15,150] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-12-24 02:16:18,297] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-12-24 02:16:23,141] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-12-24 02:16:39,844] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-12-24 02:16:44,347] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-12-24 02:16:47,474] [pool-1-thread-11] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-12-24 02:16:49,853] [pool-1-thread-7] Initializing /data/aaron/metamorph.stk: [testng] [2024-12-24 02:16:56,287] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-12-24 02:17:00,429] [pool-1-thread-11] Used files list does not include base file [testng] [2024-12-24 02:17:03,481] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-12-24 02:17:15,159] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-12-24 02:17:18,358] [pool-1-thread-10] Used files list does not include base file [testng] [2024-12-24 02:17:21,635] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-12-24 02:17:25,772] [pool-1-thread-1] Initializing /data/samples/10xcalib.stk: [testng] [2024-12-24 02:17:28,490] [pool-1-thread-7] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-12-24 02:17:31,387] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-12-24 02:17:48,976] [pool-1-thread-1] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-12-24 02:17:53,578] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-12-24 02:17:57,192] [pool-1-thread-7] Used files list does not include base file [testng] [2024-12-24 02:17:57,193] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-12-24 02:18:01,581] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-12-24 02:18:05,081] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-12-24 02:18:07,712] [pool-1-thread-8] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-12-24 02:18:18,237] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-24 02:18:20,909] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-12-24 02:18:24,279] [pool-1-thread-11] Used files list does not include base file [testng] [2024-12-24 02:18:24,314] [pool-1-thread-2] Initializing /data/steve/Experiment2.tif: [testng] [2024-12-24 02:18:28,900] [pool-1-thread-6] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-12-24 02:18:32,166] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-12-24 02:18:34,649] [pool-1-thread-8] Used files list does not include base file [testng] [2024-12-24 02:18:37,652] [pool-1-thread-4] Initializing /data/qa-16915/m-02.tif: [testng] [2024-12-24 02:18:39,968] [pool-1-thread-9] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-12-24 02:18:44,123] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-12-24 02:18:46,835] [pool-1-thread-6] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-12-24 02:18:48,536] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-12-24 02:18:55,842] [pool-1-thread-10] Initializing /data/jerome/deconv.STK: [testng] [2024-12-24 02:18:59,622] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-12-24 02:19:02,245] [pool-1-thread-4] Used files list does not include base file [testng] [2024-12-24 02:19:06,345] [pool-1-thread-6] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-12-24 02:19:12,999] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2024-12-24 02:19:20,067] [pool-1-thread-3] Initializing /data/qa-16915/m-01.tif: [testng] [2024-12-24 02:19:22,356] [pool-1-thread-6] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-12-24 02:19:46,524] [pool-1-thread-2] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-12-24 02:19:50,025] [pool-1-thread-9] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-12-24 02:19:53,345] [pool-1-thread-10] Initializing /data/josh/2101to600astk.stk: [testng] [2024-12-24 02:20:36,378] [pool-1-thread-7] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-12-24 02:20:40,879] [pool-1-thread-11] Initializing /data/alex/Selected FITC.stk: [testng] [2024-12-24 02:20:44,906] [pool-1-thread-2] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-12-24 02:20:47,085] [pool-1-thread-8] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-12-24 02:20:49,303] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-24 02:20:51,342] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-12-24 02:20:55,225] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-12-24 02:21:11,237] [pool-1-thread-11] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-12-24 02:21:16,029] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-24 02:21:18,452] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-12-24 02:21:20,562] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-12-24 02:21:22,716] [pool-1-thread-3] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-12-24 02:21:34,850] [pool-1-thread-8] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-12-24 02:21:48,636] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-12-24 02:21:50,727] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-12-24 02:21:54,770] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-24 02:21:58,975] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-24 02:22:05,053] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-12-24 02:22:08,243] [pool-1-thread-3] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-12-24 02:22:25,308] [pool-1-thread-12] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-12-24 02:22:27,532] [pool-1-thread-8] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-12-24 02:22:39,022] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2024-12-24 02:22:41,100] [pool-1-thread-11] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-12-24 02:22:49,597] [pool-1-thread-1] Initializing /data/grant/X.STK: [testng] [2024-12-24 02:22:56,430] [pool-1-thread-4] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-12-24 02:22:58,439] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-12-24 02:23:00,621] [pool-1-thread-12] Used files list does not include base file [testng] [2024-12-24 02:23:00,623] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-12-24 02:23:14,062] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-12-24 02:23:16,283] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-12-24 02:23:18,339] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-12-24 02:23:21,690] [pool-1-thread-1] Used files list does not include base file [testng] [2024-12-24 02:23:29,720] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-12-24 02:23:32,185] [pool-1-thread-11] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-12-24 02:23:36,105] [pool-1-thread-3] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-12-24 02:23:45,488] [pool-1-thread-4] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-12-24 02:23:47,680] [pool-1-thread-12] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-12-24 02:23:56,810] [pool-1-thread-2] Initializing /data/josh/2101to800.stk: [testng] [2024-12-24 02:24:11,067] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-12-24 02:24:13,908] [pool-1-thread-4] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-12-24 02:25:00,141] [pool-1-thread-12] Initializing /data/samples/zser24.stk: [testng] [2024-12-24 02:25:09,230] [pool-1-thread-5] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-12-24 02:25:12,505] [pool-1-thread-11] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-12-24 02:25:15,811] [pool-1-thread-12] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-12-24 02:25:31,503] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-12-24 02:25:33,867] [pool-1-thread-9] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-12-24 02:25:41,786] [pool-1-thread-11] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-12-24 02:25:49,429] [pool-1-thread-9] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-12-24 02:25:56,737] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-12-24 02:26:00,263] [pool-1-thread-11] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-12-24 02:26:02,429] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2024-12-24 02:26:09,980] [pool-1-thread-5] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-12-24 02:26:16,761] [pool-1-thread-2] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-12-24 02:26:20,109] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-12-24 02:26:25,713] [pool-1-thread-5] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-12-24 02:26:32,613] [pool-1-thread-9] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-12-24 02:26:34,965] [pool-1-thread-1] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-12-24 02:26:38,982] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-12-24 02:26:47,709] [pool-1-thread-2] Initializing /data/thomas/t_test2001.tif: [testng] [2024-12-24 02:26:55,056] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-12-24 02:26:57,246] [pool-1-thread-1] Initializing /data/josh/2101to600e.stk: [testng] [2024-12-24 02:27:08,374] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-12-24 02:27:31,073] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-12-24 02:27:37,912] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-12-24 02:27:40,363] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-12-24 02:27:42,719] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-12-24 02:27:50,806] [pool-1-thread-11] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-12-24 02:27:53,308] [pool-1-thread-10] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-12-24 02:27:58,947] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-12-24 02:28:04,179] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-12-24 02:28:12,864] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-24 02:28:15,496] [pool-1-thread-11] Initializing /data/david/tl4.tif: [testng] [2024-12-24 02:28:20,629] [pool-1-thread-2] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-12-24 02:28:31,664] [pool-1-thread-8] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-12-24 02:28:43,041] [pool-1-thread-11] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-12-24 02:28:47,827] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-12-24 02:28:53,032] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-12-24 02:28:58,518] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-12-24 02:29:01,098] [pool-1-thread-1] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-12-24 02:29:05,125] [pool-1-thread-11] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-12-24 02:29:11,266] [pool-1-thread-8] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-12-24 02:29:18,977] [pool-1-thread-10] Initializing /data/samples/diatoms3d.stk: [testng] [2024-12-24 02:29:22,365] [pool-1-thread-11] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-12-24 02:29:33,141] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-12-24 02:29:39,594] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-12-24 02:29:44,973] [pool-1-thread-9] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-12-24 02:29:50,641] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-12-24 02:29:53,829] [pool-1-thread-8] Used files list does not include base file [testng] [2024-12-24 02:29:59,510] [pool-1-thread-10] Initializing /data/josh/2101to600f.stk: [testng] [2024-12-24 02:30:26,164] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-12-24 02:30:28,443] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-12-24 02:30:30,457] [pool-1-thread-11] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-12-24 02:30:44,152] [pool-1-thread-11] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-12-24 02:31:16,447] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-12-24 02:31:18,448] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-12-24 02:31:26,197] [pool-1-thread-9] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-12-24 02:31:28,371] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-24 02:31:38,632] [pool-1-thread-2] Initializing /data/josh/2101to400astk.stk: [testng] [2024-12-24 02:31:59,977] [pool-1-thread-5] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-12-24 02:32:03,079] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-24 02:32:05,438] [pool-1-thread-7] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-12-24 02:32:10,292] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-24 02:32:16,105] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-12-24 02:32:23,761] [pool-1-thread-7] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-12-24 02:32:29,559] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-12-24 02:32:32,704] [pool-1-thread-1] Used files list does not include base file [testng] [2024-12-24 02:32:44,296] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-24 02:32:50,758] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-12-24 02:33:03,856] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-12-24 02:33:06,109] [pool-1-thread-8] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-12-24 02:33:30,486] [pool-1-thread-5] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-12-24 02:34:01,507] [pool-1-thread-4] Initializing /data/jae/RGB_s34.tif: [testng] [2024-12-24 02:34:20,075] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-12-24 02:34:23,468] [pool-1-thread-1] Used files list does not include base file [testng] [2024-12-24 02:34:23,979] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-12-24 02:34:27,817] [pool-1-thread-10] Used files list does not include base file [testng] [2024-12-24 02:34:27,853] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-24 02:34:57,973] [pool-1-thread-2] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-12-24 02:35:05,785] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-12-24 02:35:08,084] [pool-1-thread-4] Initializing /data/thomas/test.tif: [testng] [2024-12-24 02:35:15,477] [pool-1-thread-2] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-12-24 02:35:22,264] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-24 02:35:27,478] [pool-1-thread-4] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-12-24 02:35:50,094] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-12-24 02:35:59,146] [pool-1-thread-4] Initializing /data/samples/zserSixteen.stk: [testng] [2024-12-24 02:36:02,967] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-12-24 02:36:05,659] [pool-1-thread-9] Used files list does not include base file [testng] [2024-12-24 02:36:08,164] [pool-1-thread-8] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-12-24 02:36:16,611] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-12-24 02:36:19,240] [pool-1-thread-1] Initializing /data/samples/10xcalib.tif: [testng] [2024-12-24 02:36:21,411] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-12-24 02:36:28,836] [pool-1-thread-8] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-12-24 02:36:34,615] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-12-24 02:36:39,293] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-12-24 02:36:52,124] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-12-24 02:36:54,364] [pool-1-thread-2] Used files list does not include base file [testng] [2024-12-24 02:36:54,364] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-12-24 02:36:56,284] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-12-24 02:37:02,507] [pool-1-thread-10] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-12-24 02:37:14,363] [pool-1-thread-1] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-12-24 02:37:23,741] [pool-1-thread-8] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-12-24 02:37:25,745] [pool-1-thread-4] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-12-24 02:37:29,000] [pool-1-thread-2] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-12-24 02:37:31,201] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-12-24 02:37:42,124] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-12-24 02:37:44,458] [pool-1-thread-8] Initializing /data/qa-16887/m-01.tif: [testng] [2024-12-24 02:37:47,016] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-12-24 02:37:54,220] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-12-24 02:38:19,548] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-12-24 02:38:23,980] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-12-24 02:38:27,227] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-12-24 02:38:36,655] [pool-1-thread-4] Initializing /data/dave/Z Series.stk: [testng] [2024-12-24 02:38:42,403] [pool-1-thread-8] Initializing /data/samples/zserEight.stk: [testng] [2024-12-24 02:38:47,233] [pool-1-thread-9] Initializing /data/steve/Experiment2.stk: [testng] [2024-12-24 02:38:50,951] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-12-24 02:38:55,556] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-12-24 02:38:59,705] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-12-24 02:39:05,992] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-12-24 02:39:10,277] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-12-24 02:39:12,380] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-12-24 02:39:15,150] [pool-1-thread-4] Used files list does not include base file [testng] [2024-12-24 02:39:16,379] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-12-24 02:39:18,492] [pool-1-thread-8] Used files list does not include base file [testng] 06:04:29,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:04:29,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:04:29,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-24_06-04-29.log] [testng] 06:04:29,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4962156a - End of configuration. [testng] 06:08:04,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:08:04,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:08:04,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-24_06-08-04.log] [testng] 06:08:04,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23f74f64 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 257 minutes 31 seconds Finished: SUCCESS