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Started by upstream project "BIOFORMATS-test-repo" build number 297 originally caused by: Started by upstream project "Trigger" build number 319 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins13475500048009469326.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46992_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml compile-tests: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:01:56,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:01:56,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 02:01:56,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:56,923 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:56,923 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:01:56,923 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:01:56,923 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:01:56,923 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:56,924 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:56,924 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:01:56,925 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:01:56,925 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:01:57,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:01:57,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:01:57,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:01:57,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:01:57,195 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:01:57,195 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:01:57,195 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:01:57,196 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:01:57,196 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 02:01:57,196 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 02:01:57,197 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-24 02:01:57,206] [main] java.version = 1.8.0_342 [testng] 02:01:57,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:01:57,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:57,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-24_02-01-57.log] [testng] 02:01:57,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-24 02:01:57,256] [main] testng.directory = /data [testng] [2024-12-24 02:01:57,256] [main] testng.configDirectory = /config [testng] [2024-12-24 02:01:57,268] [main] testng.multiplier = 1.0 [testng] [2024-12-24 02:01:57,268] [main] testng.in-memory = false [testng] [2024-12-24 02:01:57,268] [main] testng.allow-missing = false [testng] [2024-12-24 02:01:57,268] [main] user.language = en [testng] [2024-12-24 02:01:57,268] [main] user.country = ${user.country} [testng] [2024-12-24 02:01:57,268] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-24 02:05:07,094] [main] ---------------------------------------- [testng] [2024-12-24 02:05:07,095] [main] Total files: 268 [testng] [2024-12-24 02:05:07,095] [main] Scan time: 189.826 s (708 ms/file) [testng] [2024-12-24 02:05:07,095] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-24 02:09:12,297] [pool-1-thread-1] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] 02:09:12,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:09:12,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:12,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-24_02-09-12.log] [testng] 02:09:12,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28f87359 - End of configuration. [testng] [2024-12-24 02:09:13,328] [pool-1-thread-12] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] 02:09:13,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:09:13,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:13,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-24_02-09-13.log] [testng] 02:09:13,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@224d7624 - End of configuration. [testng] [2024-12-24 02:09:15,722] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] 02:09:15,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:09:15,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:15,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-24_02-09-15.log] [testng] 02:09:15,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7833f4b3 - End of configuration. [testng] [2024-12-24 02:09:16,325] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] 02:09:16,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:09:16,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:16,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-24_02-09-16.log] [testng] 02:09:16,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f8bc7e2 - End of configuration. [testng] [2024-12-24 02:09:17,041] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] 02:09:17,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:09:17,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:17,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-24_02-09-17.log] [testng] 02:09:17,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52752ae - End of configuration. [testng] [2024-12-24 02:09:17,750] [pool-1-thread-8] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] 02:09:17,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:09:17,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:17,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-24_02-09-17.log] [testng] 02:09:17,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@595ed066 - End of configuration. [testng] [2024-12-24 02:09:20,330] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] 02:09:20,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:09:20,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:20,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-24_02-09-20.log] [testng] 02:09:20,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ccc4c3 - End of configuration. [testng] [2024-12-24 02:09:20,954] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] 02:09:20,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:09:20,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:20,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-24_02-09-20.log] [testng] 02:09:20,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f232644 - End of configuration. [testng] [2024-12-24 02:09:21,596] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] 02:09:21,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:09:21,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:21,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-24_02-09-21.log] [testng] 02:09:21,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@704ef323 - End of configuration. [testng] [2024-12-24 02:09:22,486] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 02:09:22,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:09:22,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:22,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-24_02-09-22.log] [testng] 02:09:22,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6859d703 - End of configuration. [testng] [2024-12-24 02:09:23,197] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] 02:09:23,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:09:23,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:23,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-24_02-09-23.log] [testng] 02:09:23,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a5327ec - End of configuration. [testng] [2024-12-24 02:09:24,015] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] 02:09:24,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:09:24,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:09:24,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-24_02-09-24.log] [testng] 02:09:24,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353635aa - End of configuration. [testng] [2024-12-24 02:09:30,350] [pool-1-thread-6] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-12-24 02:09:32,990] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-12-24 02:09:34,309] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-12-24 02:09:35,075] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-12-24 02:09:36,096] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-12-24 02:09:36,668] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-12-24 02:09:37,300] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-12-24 02:09:38,540] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-12-24 02:09:41,968] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-12-24 02:09:44,528] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-12-24 02:09:45,521] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-12-24 02:09:46,096] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-12-24 02:09:46,769] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-12-24 02:09:47,072] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-12-24 02:09:48,842] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-12-24 02:09:49,204] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-12-24 02:09:50,430] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-12-24 02:09:55,417] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-12-24 02:09:58,519] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-12-24 02:09:59,424] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-12-24 02:10:00,575] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-12-24 02:10:01,246] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-12-24 02:10:02,116] [pool-1-thread-5] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-12-24 02:10:02,710] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-12-24 02:10:04,848] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-12-24 02:10:06,123] [pool-1-thread-10] Initializing /data/steve/FITS/M51.fits: [testng] [2024-12-24 02:10:06,422] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-12-24 02:10:08,126] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-12-24 02:10:09,556] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-12-24 02:10:10,809] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-12-24 02:10:11,406] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-12-24 02:10:11,952] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-12-24 02:10:12,539] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-12-24 02:10:14,349] [pool-1-thread-12] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-12-24 02:10:15,147] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-12-24 02:10:15,883] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-12-24 02:10:18,581] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-12-24 02:10:20,700] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-12-24 02:10:22,239] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-12-24 02:10:22,781] [pool-1-thread-6] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-12-24 02:10:25,510] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-12-24 02:10:26,207] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-12-24 02:10:26,592] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-12-24 02:10:27,581] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-12-24 02:10:28,240] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-12-24 02:10:28,869] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-12-24 02:10:32,113] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-12-24 02:10:33,434] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-12-24 02:10:36,078] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-12-24 02:10:38,458] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-12-24 02:10:41,420] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-12-24 02:10:42,037] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-12-24 02:10:43,503] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-12-24 02:10:44,546] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-12-24 02:10:45,539] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-12-24 02:10:47,600] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-12-24 02:10:49,290] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-12-24 02:10:49,710] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-12-24 02:10:51,068] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-12-24 02:10:52,408] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-12-24 02:10:53,187] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-12-24 02:10:54,466] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-12-24 02:10:55,194] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-12-24 02:10:56,201] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-12-24 02:10:56,795] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-12-24 02:10:58,572] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-12-24 02:11:01,020] [pool-1-thread-1] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-12-24 02:11:01,483] [pool-1-thread-3] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-12-24 02:11:03,905] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-12-24 02:11:04,606] [pool-1-thread-9] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-12-24 02:11:06,886] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-12-24 02:11:08,143] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-12-24 02:11:09,090] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-12-24 02:11:09,992] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-12-24 02:11:12,228] [pool-1-thread-6] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-12-24 02:11:14,931] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-12-24 02:11:17,640] [pool-1-thread-10] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-12-24 02:11:22,473] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-12-24 02:11:23,747] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-12-24 02:11:26,519] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-12-24 02:11:30,545] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-12-24 02:11:31,744] [pool-1-thread-4] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-12-24 02:11:32,949] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-12-24 02:11:35,306] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-12-24 02:11:35,725] [pool-1-thread-3] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-12-24 02:11:40,723] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-12-24 02:11:41,633] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-12-24 02:11:45,169] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-12-24 02:11:45,803] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-12-24 02:11:46,892] [pool-1-thread-11] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-12-24 02:11:50,560] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-12-24 02:11:51,661] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-12-24 02:11:52,129] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-12-24 02:11:53,007] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-12-24 02:11:53,467] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-12-24 02:11:54,821] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-12-24 02:11:58,841] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-12-24 02:12:01,673] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-12-24 02:12:04,667] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-12-24 02:12:07,500] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-12-24 02:12:08,332] [pool-1-thread-3] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-12-24 02:12:11,056] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-12-24 02:12:11,743] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-12-24 02:12:14,491] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-12-24 02:12:16,658] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-12-24 02:12:17,166] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-12-24 02:12:21,031] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-12-24 02:12:21,964] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-12-24 02:12:24,354] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-12-24 02:12:27,037] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-12-24 02:12:30,724] [pool-1-thread-9] Initializing /data/steve/FITS/M13.fits: [testng] [2024-12-24 02:12:31,913] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-12-24 02:12:34,858] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-12-24 02:12:36,497] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-12-24 02:12:37,761] [pool-1-thread-9] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-12-24 02:12:38,564] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-12-24 02:12:39,999] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-12-24 02:12:42,179] [pool-1-thread-11] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-12-24 02:12:45,298] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-12-24 02:12:46,325] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-12-24 02:12:48,284] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-12-24 02:12:51,335] [pool-1-thread-12] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-12-24 02:12:54,423] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-12-24 02:12:57,808] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-12-24 02:13:00,979] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-12-24 02:13:01,874] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2024-12-24 02:13:02,132] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-12-24 02:13:03,567] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-12-24 02:13:04,885] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-12-24 02:13:07,817] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-12-24 02:13:11,843] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-12-24 02:13:14,517] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-12-24 02:13:16,284] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-12-24 02:13:16,588] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-12-24 02:13:17,589] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-12-24 02:13:19,038] [pool-1-thread-7] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-12-24 02:13:22,206] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-12-24 02:13:23,114] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-12-24 02:13:23,980] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-12-24 02:13:26,984] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-12-24 02:13:29,294] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-12-24 02:13:31,132] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-12-24 02:13:34,743] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-12-24 02:13:35,616] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-12-24 02:13:38,714] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-12-24 02:13:40,421] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-12-24 02:13:41,125] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-12-24 02:13:43,526] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 minutes 11 seconds Finished: SUCCESS