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Started by upstream project "BIOFORMATS-test-repo" build number 297 originally caused by: Started by upstream project "Trigger" build number 319 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins6024100609365780573.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46994_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml compile-tests: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:14:18,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:14:18,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:14:18,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:14:18,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:14:18,842 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:14:18,842 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:14:18,842 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:14:18,842 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:14:18,843 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 02:14:18,843 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 02:14:18,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 515 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-24 02:14:18,854] [main] java.version = 1.8.0_342 [testng] 02:14:18,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:14:18,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:14:18,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-24_02-14-18.log] [testng] 02:14:18,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-24 02:14:18,941] [main] testng.directory = /data [testng] [2024-12-24 02:14:18,941] [main] testng.configDirectory = /config [testng] [2024-12-24 02:14:18,961] [main] testng.multiplier = 1.0 [testng] [2024-12-24 02:14:18,962] [main] testng.in-memory = false [testng] [2024-12-24 02:14:18,962] [main] testng.allow-missing = false [testng] [2024-12-24 02:14:18,962] [main] user.language = en [testng] [2024-12-24 02:14:18,962] [main] user.country = ${user.country} [testng] [2024-12-24 02:14:18,962] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-24 02:14:47,003] [main] ---------------------------------------- [testng] [2024-12-24 02:14:47,003] [main] Total files: 19 [testng] [2024-12-24 02:14:47,003] [main] Scan time: 28.041 s (1475 ms/file) [testng] [2024-12-24 02:14:47,003] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-24 02:15:14,634] [pool-1-thread-1] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 02:15:14,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:15:14,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:14,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-24_02-15-14.log] [testng] 02:15:14,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3836eeee - End of configuration. [testng] [2024-12-24 02:15:15,660] [pool-1-thread-12] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 02:15:15,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:15:15,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:15,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-24_02-15-15.log] [testng] 02:15:15,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17f87bde - End of configuration. [testng] [2024-12-24 02:15:17,035] [pool-1-thread-11] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 02:15:17,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:15:17,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:17,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-24_02-15-17.log] [testng] 02:15:17,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c392f7 - End of configuration. [testng] [2024-12-24 02:15:18,422] [pool-1-thread-10] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] 02:15:18,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:15:18,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:18,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-24_02-15-18.log] [testng] 02:15:18,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3938678a - End of configuration. [testng] [2024-12-24 02:15:19,855] [pool-1-thread-9] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 02:15:19,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:15:19,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:19,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-24_02-15-19.log] [testng] 02:15:19,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b3d1c4a - End of configuration. [testng] [2024-12-24 02:15:20,771] [pool-1-thread-8] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 02:15:20,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:15:20,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:20,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-24_02-15-20.log] [testng] 02:15:20,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3392e39d - End of configuration. [testng] [2024-12-24 02:15:21,872] [pool-1-thread-7] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 02:15:21,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:15:21,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:21,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-24_02-15-21.log] [testng] 02:15:21,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56b1cd69 - End of configuration. [testng] [2024-12-24 02:15:22,993] [pool-1-thread-6] Initializing /data/todd/movement-1.htm: [testng] 02:15:22,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:15:22,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:22,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-24_02-15-22.log] [testng] 02:15:22,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ea5cf40 - End of configuration. [testng] [2024-12-24 02:15:24,446] [pool-1-thread-5] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] 02:15:24,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:15:24,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:24,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-24_02-15-24.log] [testng] 02:15:24,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b9660d - End of configuration. [testng] [2024-12-24 02:15:25,717] [pool-1-thread-4] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] 02:15:25,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:15:25,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:25,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-24_02-15-25.log] [testng] 02:15:25,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3483da71 - End of configuration. [testng] [2024-12-24 02:15:26,935] [pool-1-thread-3] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] 02:15:26,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:15:26,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:26,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-24_02-15-26.log] [testng] 02:15:26,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c9cec67 - End of configuration. [testng] [2024-12-24 02:15:28,305] [pool-1-thread-2] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 02:15:28,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:15:28,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:28,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-24_02-15-28.log] [testng] 02:15:28,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@376169a3 - End of configuration. [testng] [2024-12-24 02:16:13,748] [pool-1-thread-2] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] [2024-12-24 02:16:15,644] [pool-1-thread-10] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] [2024-12-24 02:16:17,476] [pool-1-thread-4] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] [2024-12-24 02:16:27,833] [pool-1-thread-6] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] [2024-12-24 02:16:33,112] [pool-1-thread-3] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] [2024-12-24 02:17:03,958] [pool-1-thread-7] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 minutes 42 seconds Finished: SUCCESS