![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 298 originally caused by: Started by upstream project "Trigger" build number 320 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15677021751789480618.sh + '[' specs = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47095_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:30:38,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:30:38,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:30:38,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:38,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:38,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:30:38,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:30:38,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:30:38,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:38,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:38,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:30:38,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:30:38,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:30:39,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:30:39,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:30:39,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:30:39,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:30:39,063 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:30:39,063 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:30:39,063 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:30:39,063 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:30:39,063 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:30:39,065 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:30:39,065 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-25 00:30:39,073] [main] java.version = 17.0.2 [testng] 00:30:39,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:30:39,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:39,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_00-30-39.log] [testng] 00:30:39,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-25 00:30:39,121] [main] testng.directory = /data [testng] [2024-12-25 00:30:39,122] [main] testng.configDirectory = /config [testng] [2024-12-25 00:30:39,130] [main] testng.multiplier = 1.0 [testng] [2024-12-25 00:30:39,131] [main] testng.in-memory = false [testng] [2024-12-25 00:30:39,132] [main] testng.allow-missing = false [testng] [2024-12-25 00:30:39,132] [main] user.language = en [testng] [2024-12-25 00:30:39,132] [main] user.country = ${user.country} [testng] [2024-12-25 00:30:39,132] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-25 00:35:42,341] [main] ---------------------------------------- [testng] [2024-12-25 00:35:42,342] [main] Total files: 226 [testng] [2024-12-25 00:35:42,342] [main] Scan time: 303.209 s (1341 ms/file) [testng] [2024-12-25 00:35:42,342] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-25 00:39:58,994] [pool-1-thread-1] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 00:39:58,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:39:58,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:39:58,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_00-39-58.log] [testng] 00:39:58,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bcf0c7c - End of configuration. [testng] [2024-12-25 00:39:59,624] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.tif: [testng] 00:39:59,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:39:59,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:39:59,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_00-39-59.log] [testng] 00:39:59,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40d66b88 - End of configuration. [testng] [2024-12-25 00:40:00,535] [pool-1-thread-11] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] 00:40:00,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:40:00,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:00,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_00-40-00.log] [testng] 00:40:00,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bbc5e - End of configuration. [testng] [2024-12-25 00:40:01,164] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 00:40:01,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:40:01,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:01,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_00-40-01.log] [testng] 00:40:01,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65752038 - End of configuration. [testng] [2024-12-25 00:40:02,001] [pool-1-thread-9] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 00:40:02,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:40:02,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:02,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_00-40-02.log] [testng] 00:40:02,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@794b3b0a - End of configuration. [testng] [2024-12-25 00:40:02,155] [pool-1-thread-8] Initializing /data/iplab/3t3 Cell.IPL: [testng] 00:40:02,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:40:02,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:02,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_00-40-02.log] [testng] 00:40:02,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad6f042 - End of configuration. [testng] [2024-12-25 00:40:02,315] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL: [testng] 00:40:02,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:40:02,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:02,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_00-40-02.log] [testng] 00:40:02,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16bb8175 - End of configuration. [testng] [2024-12-25 00:40:02,480] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL: [testng] 00:40:02,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:40:02,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:02,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_00-40-02.log] [testng] 00:40:02,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4660a089 - End of configuration. [testng] [2024-12-25 00:40:02,643] [pool-1-thread-5] Initializing /data/iplab/16Bit XRay.IPL: [testng] 00:40:02,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:40:02,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:02,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_00-40-02.log] [testng] 00:40:02,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b37e9a7 - End of configuration. [testng] [2024-12-25 00:40:02,786] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 00:40:02,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:40:02,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:02,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_00-40-02.log] [testng] 00:40:02,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3e9773 - End of configuration. [testng] [2024-12-25 00:40:02,983] [pool-1-thread-3] Initializing /data/fluoview/Sample_XT.tif: [testng] 00:40:02,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:40:02,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:02,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_00-40-02.log] [testng] 00:40:02,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20945a05 - End of configuration. [testng] [2024-12-25 00:40:03,849] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 00:40:03,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:40:03,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:03,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_00-40-03.log] [testng] 00:40:03,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b8fb0dc - End of configuration. [testng] [2024-12-25 00:40:08,626] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2024-12-25 00:40:08,863] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-12-25 00:40:09,098] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-12-25 00:40:09,273] [pool-1-thread-6] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2024-12-25 00:40:10,411] [pool-1-thread-4] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-12-25 00:40:10,549] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-12-25 00:40:14,120] [pool-1-thread-7] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2024-12-25 00:40:14,471] [pool-1-thread-4] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-12-25 00:40:14,743] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2024-12-25 00:40:16,186] [pool-1-thread-8] Initializing /data/iplab/Actin.IPL: [testng] [2024-12-25 00:40:17,233] [pool-1-thread-2] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-12-25 00:40:17,402] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-12-25 00:40:18,179] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-12-25 00:40:19,246] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL: [testng] [2024-12-25 00:40:19,713] [pool-1-thread-4] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2024-12-25 00:40:21,034] [pool-1-thread-7] Initializing /data/fluoview/SpineAnimation.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 minutes 58 seconds Finished: SUCCESS