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Started by upstream project "BIOFORMATS-test-repo" build number 298 originally caused by: Started by upstream project "Trigger" build number 320 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17596586325733771906.sh + '[' targa = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47106_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:42:38,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:42:38,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:42:38,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:42:38,154 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:42:38,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:42:38,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:42:38,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:42:38,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:42:38,156 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:42:38,156 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:42:38,157 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:42:38,157 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:42:38,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:42:38,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:42:38,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:42:38,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:42:38,381 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:42:38,381 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:42:38,381 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:42:38,382 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:42:38,382 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:42:38,383 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:42:38,383 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 227 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-25 00:42:38,392] [main] java.version = 17.0.2 [testng] 00:42:38,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:42:38,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:38,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_00-42-38.log] [testng] 00:42:38,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-25 00:42:38,440] [main] testng.directory = /data [testng] [2024-12-25 00:42:38,440] [main] testng.configDirectory = /config [testng] [2024-12-25 00:42:38,449] [main] testng.multiplier = 1.0 [testng] [2024-12-25 00:42:38,450] [main] testng.in-memory = false [testng] [2024-12-25 00:42:38,450] [main] testng.allow-missing = false [testng] [2024-12-25 00:42:38,450] [main] user.language = en [testng] [2024-12-25 00:42:38,450] [main] user.country = ${user.country} [testng] [2024-12-25 00:42:38,450] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-25 00:42:38,935] [main] ---------------------------------------- [testng] [2024-12-25 00:42:38,935] [main] Total files: 21 [testng] [2024-12-25 00:42:38,935] [main] Scan time: 0.485 s (23 ms/file) [testng] [2024-12-25 00:42:38,935] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-25 00:42:49,689] [pool-1-thread-1] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:42:49,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:42:49,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:49,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_00-42-49.log] [testng] 00:42:49,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b96b293 - End of configuration. [testng] [2024-12-25 00:42:50,005] [pool-1-thread-12] Initializing /data/samples/CBW8.TGA: [testng] 00:42:50,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:42:50,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:50,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_00-42-50.log] [testng] 00:42:50,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@586c13ca - End of configuration. [testng] [2024-12-25 00:42:50,270] [pool-1-thread-11] Initializing /data/samples/XING_B16.TGA: [testng] 00:42:50,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:42:50,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:50,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_00-42-50.log] [testng] 00:42:50,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36e95d7c - End of configuration. [testng] [2024-12-25 00:42:50,454] [pool-1-thread-10] Initializing /data/samples/UBW8.TGA: [testng] 00:42:50,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:42:50,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:50,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_00-42-50.log] [testng] 00:42:50,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ea15f1 - End of configuration. [testng] [2024-12-25 00:42:50,682] [pool-1-thread-9] Initializing /data/samples/XING_T24.TGA: [testng] 00:42:50,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:42:50,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:50,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_00-42-50.log] [testng] 00:42:50,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fda905 - End of configuration. [testng] [2024-12-25 00:42:50,944] [pool-1-thread-8] Initializing /data/samples/UTC32.TGA: [testng] 00:42:50,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:42:50,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:50,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_00-42-50.log] [testng] 00:42:50,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ef81a5 - End of configuration. [testng] [2024-12-25 00:42:51,316] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA: [testng] 00:42:51,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:42:51,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:51,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_00-42-51.log] [testng] 00:42:51,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29688cb4 - End of configuration. [testng] [2024-12-25 00:42:51,617] [pool-1-thread-6] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:42:51,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:42:51,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:51,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_00-42-51.log] [testng] 00:42:51,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18120a93 - End of configuration. [testng] [2024-12-25 00:42:51,929] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:42:51,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:42:51,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:51,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_00-42-51.log] [testng] 00:42:51,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e20d3c9 - End of configuration. [testng] [2024-12-25 00:42:52,208] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA: [testng] 00:42:52,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:42:52,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:52,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_00-42-52.log] [testng] 00:42:52,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39ae5535 - End of configuration. [testng] [2024-12-25 00:42:52,417] [pool-1-thread-3] Initializing /data/samples/XING_T16.TGA: [testng] 00:42:52,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:42:52,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:52,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_00-42-52.log] [testng] 00:42:52,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1505972d - End of configuration. [testng] [2024-12-25 00:42:52,608] [pool-1-thread-2] Initializing /data/samples/CTC24.TGA: [testng] 00:42:52,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:42:52,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:52,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_00-42-52.log] [testng] 00:42:52,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@307674fd - End of configuration. [testng] [2024-12-25 00:42:58,336] [pool-1-thread-12] Initializing /data/samples/FLAG_B16.TGA: [testng] [2024-12-25 00:42:58,692] [pool-1-thread-8] Initializing /data/samples/XING_T32.TGA: [testng] [2024-12-25 00:42:58,911] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA: [testng] [2024-12-25 00:42:59,112] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] [2024-12-25 00:42:59,299] [pool-1-thread-2] Initializing /data/samples/MARBLES.TGA: [testng] [2024-12-25 00:42:59,603] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA: [testng] [2024-12-25 00:42:59,877] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] [2024-12-25 00:43:00,107] [pool-1-thread-11] Initializing /data/samples/XING_B32.TGA: [testng] [2024-12-25 00:43:00,421] [pool-1-thread-4] Initializing /data/samples/UTC16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS