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Started by upstream project "BIOFORMATS-test-repo" build number 298 originally caused by: Started by upstream project "Trigger" build number 320 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins10366720343908156259.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47157_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:17:51,968 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:17:51,969 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:17:51,969 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:17:51,970 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:17:51,971 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:17:51,971 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:17:51,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:17:51,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:17:51,972 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:17:51,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:17:51,973 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:17:51,973 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:17:52,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:17:52,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:17:52,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:17:52,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:17:52,159 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:17:52,159 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:17:52,159 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:17:52,160 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:17:52,160 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:17:52,161 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:17:52,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-25 02:17:52,169] [main] java.version = 17.0.2 [testng] 02:17:52,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:17:52,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:52,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_02-17-52.log] [testng] 02:17:52,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-25 02:17:52,217] [main] testng.directory = /data [testng] [2024-12-25 02:17:52,217] [main] testng.configDirectory = /config [testng] [2024-12-25 02:17:52,225] [main] testng.multiplier = 1.0 [testng] [2024-12-25 02:17:52,226] [main] testng.in-memory = false [testng] [2024-12-25 02:17:52,226] [main] testng.allow-missing = false [testng] [2024-12-25 02:17:52,226] [main] user.language = en [testng] [2024-12-25 02:17:52,226] [main] user.country = ${user.country} [testng] [2024-12-25 02:17:52,227] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-25 02:22:05,664] [main] ---------------------------------------- [testng] [2024-12-25 02:22:05,665] [main] Total files: 268 [testng] [2024-12-25 02:22:05,665] [main] Scan time: 253.437 s (945 ms/file) [testng] [2024-12-25 02:22:05,665] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-25 02:28:03,803] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] 02:28:03,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:28:03,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:03,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_02-28-03.log] [testng] 02:28:03,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d49629d - End of configuration. [testng] [2024-12-25 02:28:05,670] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] 02:28:05,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:28:05,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:05,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_02-28-05.log] [testng] 02:28:05,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fd6bdc - End of configuration. [testng] [2024-12-25 02:28:06,111] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] 02:28:06,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:28:06,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:06,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_02-28-06.log] [testng] 02:28:06,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e483971 - End of configuration. [testng] [2024-12-25 02:28:08,041] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] 02:28:08,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:28:08,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:08,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_02-28-08.log] [testng] 02:28:08,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c2deafb - End of configuration. [testng] [2024-12-25 02:28:08,618] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 02:28:08,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:28:08,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:08,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_02-28-08.log] [testng] 02:28:08,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1db12736 - End of configuration. [testng] [2024-12-25 02:28:09,146] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] 02:28:09,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:28:09,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:09,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_02-28-09.log] [testng] 02:28:09,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c2be8af - End of configuration. [testng] [2024-12-25 02:28:10,965] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] 02:28:10,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:28:10,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:10,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_02-28-10.log] [testng] 02:28:10,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c887f0 - End of configuration. [testng] [2024-12-25 02:28:11,557] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] 02:28:11,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:28:11,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:11,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_02-28-11.log] [testng] 02:28:11,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79f88d2e - End of configuration. [testng] [2024-12-25 02:28:12,000] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] 02:28:12,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:28:12,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:12,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_02-28-12.log] [testng] 02:28:12,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ffe2ae7 - End of configuration. [testng] [2024-12-25 02:28:13,315] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] 02:28:13,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:28:13,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:13,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_02-28-13.log] [testng] 02:28:13,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc1fd5e - End of configuration. [testng] [2024-12-25 02:28:15,026] [pool-1-thread-3] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] 02:28:15,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:28:15,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:15,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_02-28-15.log] [testng] 02:28:15,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10cca014 - End of configuration. [testng] [2024-12-25 02:28:15,720] [pool-1-thread-2] Initializing /data/steve/TIFF/Little owl TIFF: [testng] 02:28:15,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:28:15,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:15,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_02-28-15.log] [testng] 02:28:15,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46cdab84 - End of configuration. [testng] [2024-12-25 02:28:22,854] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-12-25 02:28:25,014] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-12-25 02:28:25,528] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-12-25 02:28:26,058] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-12-25 02:28:28,057] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-12-25 02:28:29,927] [pool-1-thread-3] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-12-25 02:28:34,856] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-12-25 02:28:36,100] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-12-25 02:28:36,439] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-12-25 02:28:36,739] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-12-25 02:28:38,288] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-12-25 02:28:38,860] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-12-25 02:28:39,460] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-12-25 02:28:40,800] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-12-25 02:28:41,181] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-12-25 02:28:45,584] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-12-25 02:28:46,369] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-12-25 02:28:47,180] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-12-25 02:28:48,283] [pool-1-thread-3] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-12-25 02:28:50,533] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-12-25 02:28:50,853] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-12-25 02:28:51,491] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-12-25 02:28:52,537] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-12-25 02:28:56,057] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-12-25 02:28:56,401] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-12-25 02:28:58,134] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-12-25 02:28:59,728] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-12-25 02:29:00,295] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-12-25 02:29:02,091] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-12-25 02:29:02,680] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-12-25 02:29:03,290] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-12-25 02:29:03,639] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-12-25 02:29:04,986] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-12-25 02:29:05,392] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-12-25 02:29:08,339] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-12-25 02:29:11,253] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-12-25 02:29:11,742] [pool-1-thread-4] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-12-25 02:29:13,920] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-12-25 02:29:14,550] [pool-1-thread-10] Initializing /data/steve/FITS/M51.fits: [testng] [2024-12-25 02:29:14,716] [pool-1-thread-7] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-12-25 02:29:15,501] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-12-25 02:29:15,807] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-12-25 02:29:16,422] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-12-25 02:29:18,156] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-12-25 02:29:21,539] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-12-25 02:29:22,871] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-12-25 02:29:23,371] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-12-25 02:29:24,908] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-12-25 02:29:25,254] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-12-25 02:29:26,003] [pool-1-thread-8] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-12-25 02:29:27,684] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-12-25 02:29:28,741] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-12-25 02:29:30,787] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-12-25 02:29:31,607] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-12-25 02:29:32,039] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-12-25 02:29:32,953] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-12-25 02:29:34,389] [pool-1-thread-5] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-12-25 02:29:35,635] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-12-25 02:29:37,081] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-12-25 02:29:38,471] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-12-25 02:29:39,528] [pool-1-thread-11] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-12-25 02:29:41,009] [pool-1-thread-2] Initializing /data/steve/FITS/M13.fits: [testng] [2024-12-25 02:29:41,339] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-12-25 02:29:42,870] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-12-25 02:29:43,594] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-12-25 02:29:44,068] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-12-25 02:29:44,603] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-12-25 02:29:46,565] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-12-25 02:29:47,446] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-12-25 02:29:48,423] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-12-25 02:29:49,123] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-12-25 02:29:50,733] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-12-25 02:29:51,487] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-12-25 02:29:52,532] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-12-25 02:29:53,282] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-12-25 02:29:54,092] [pool-1-thread-11] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-12-25 02:29:54,838] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-12-25 02:29:55,353] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-12-25 02:29:55,511] [pool-1-thread-6] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-12-25 02:29:55,911] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-12-25 02:29:56,250] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-12-25 02:29:57,918] [pool-1-thread-8] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-12-25 02:29:58,555] [pool-1-thread-10] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-12-25 02:30:00,368] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-12-25 02:30:00,777] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-12-25 02:30:03,105] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-12-25 02:30:03,841] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-12-25 02:30:05,890] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-12-25 02:30:06,385] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-12-25 02:30:07,063] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-12-25 02:30:07,626] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-12-25 02:30:09,369] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-12-25 02:30:10,547] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-12-25 02:30:11,119] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-12-25 02:30:12,520] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-12-25 02:30:13,113] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-12-25 02:30:15,135] [pool-1-thread-2] Initializing /data/steve/FITS/M104.fits: [testng] [2024-12-25 02:30:15,813] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-12-25 02:30:17,608] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-12-25 02:30:20,051] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-12-25 02:30:20,769] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-12-25 02:30:22,690] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-12-25 02:30:23,986] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-12-25 02:30:24,655] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-12-25 02:30:26,706] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-12-25 02:30:27,286] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-12-25 02:30:28,862] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-12-25 02:30:29,389] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-12-25 02:30:30,140] [pool-1-thread-2] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-12-25 02:30:32,232] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-12-25 02:30:34,328] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-12-25 02:30:35,301] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-12-25 02:30:35,990] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-12-25 02:30:37,025] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-12-25 02:30:39,361] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-12-25 02:30:40,072] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-12-25 02:30:40,640] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-12-25 02:30:41,239] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-12-25 02:30:42,259] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-12-25 02:30:44,323] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-12-25 02:30:44,765] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-12-25 02:30:46,850] [pool-1-thread-4] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-12-25 02:30:49,008] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-12-25 02:30:49,580] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-12-25 02:30:50,959] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-12-25 02:30:51,527] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-12-25 02:30:53,093] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-12-25 02:30:53,526] [pool-1-thread-10] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-12-25 02:30:54,959] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-12-25 02:30:55,353] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-12-25 02:30:56,474] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-12-25 02:30:58,219] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-12-25 02:30:59,150] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-12-25 02:30:59,707] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-12-25 02:31:00,455] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-12-25 02:31:01,847] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-12-25 02:31:02,633] [pool-1-thread-8] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-12-25 02:31:04,196] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-12-25 02:31:04,908] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-12-25 02:31:06,633] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-12-25 02:31:07,637] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-12-25 02:31:09,407] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-12-25 02:31:10,153] [pool-1-thread-11] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-12-25 02:31:12,099] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-12-25 02:31:12,685] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-12-25 02:31:14,246] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-12-25 02:31:15,091] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-12-25 02:31:17,333] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 minutes 41 seconds Finished: SUCCESS