Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 298
originally caused by:
 Started by upstream project "Trigger" build number 320
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins1144297433215853680.sh
+ '[' apng = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47195_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 04:25:45,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 04:25:45,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 04:25:45,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:25:45,787 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:25:45,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 04:25:45,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 04:25:45,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 04:25:45,788 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:25:45,789 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:25:45,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 04:25:45,790 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 04:25:45,790 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 04:25:45,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 04:25:45,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 04:25:45,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 04:25:45,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 04:25:45,979 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 04:25:45,979 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 04:25:45,979 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 04:25:45,979 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 04:25:45,979 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 04:25:45,980 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 04:25:45,980 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-25 04:25:45,989] [main] java.version = 17.0.2
   [testng] 04:25:45,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:25:45,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:46,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_04-25-46.log]
   [testng] 04:25:46,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-12-25 04:25:46,036] [main] testng.directory = /data
   [testng] [2024-12-25 04:25:46,036] [main] testng.configDirectory = /config
   [testng] [2024-12-25 04:25:46,044] [main] testng.multiplier = 1.0
   [testng] [2024-12-25 04:25:46,045] [main] testng.in-memory = false
   [testng] [2024-12-25 04:25:46,045] [main] testng.allow-missing = false
   [testng] [2024-12-25 04:25:46,045] [main] user.language = en
   [testng] [2024-12-25 04:25:46,045] [main] user.country = ${user.country}
   [testng] [2024-12-25 04:25:46,045] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-25 04:25:46,567] [main] ----------------------------------------
   [testng] [2024-12-25 04:25:46,567] [main] Total files: 21
   [testng] [2024-12-25 04:25:46,567] [main] Scan time: 0.521 s (24 ms/file)
   [testng] [2024-12-25 04:25:46,568] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-25 04:25:49,487] [pool-1-thread-1] Initializing /data/qa-7473/n.tif: 
   [testng] 04:25:49,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:25:49,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:49,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_04-25-49.log]
   [testng] 04:25:49,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4219fa9e - End of configuration.
   [testng] [2024-12-25 04:25:51,477] [pool-1-thread-12] Initializing /data/samples/william_wong04.png: 
   [testng] 04:25:51,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:25:51,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:51,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_04-25-51.log]
   [testng] 04:25:51,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6283febf - End of configuration.
   [testng] [2024-12-25 04:25:51,531] [pool-1-thread-11] Initializing /data/samples/MoonPhases.png: 
   [testng] 04:25:51,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:25:51,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:51,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_04-25-51.log]
   [testng] 04:25:51,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cbe127a - End of configuration.
   [testng] [2024-12-25 04:25:51,590] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: 
   [testng] 04:25:51,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:25:51,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:51,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_04-25-51.log]
   [testng] 04:25:51,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77fce3be - End of configuration.
   [testng] [2024-12-25 04:25:51,652] [pool-1-thread-9] Initializing /data/samples/Sun.png: 
   [testng] 04:25:51,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:25:51,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:51,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_04-25-51.log]
   [testng] 04:25:51,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58f75cd7 - End of configuration.
   [testng] [2024-12-25 04:25:51,712] [pool-1-thread-8] Initializing /data/samples/Matrix.png: 
   [testng] 04:25:51,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:25:51,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:51,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_04-25-51.log]
   [testng] 04:25:51,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17f4019 - End of configuration.
   [testng] [2024-12-25 04:25:51,767] [pool-1-thread-7] Initializing /data/samples/orbit.png: 
   [testng] 04:25:51,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:25:51,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:51,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_04-25-51.log]
   [testng] 04:25:51,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c64119c - End of configuration.
   [testng] [2024-12-25 04:25:51,840] [pool-1-thread-6] Initializing /data/samples/spinfox.png: 
   [testng] 04:25:51,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:25:51,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:51,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_04-25-51.log]
   [testng] 04:25:51,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f50db82 - End of configuration.
   [testng] [2024-12-25 04:25:51,901] [pool-1-thread-5] Initializing /data/samples/william_wong02.png: 
   [testng] 04:25:51,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:25:51,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:51,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_04-25-51.log]
   [testng] 04:25:51,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764c4dc4 - End of configuration.
   [testng] [2024-12-25 04:25:51,964] [pool-1-thread-4] Initializing /data/samples/phug_logo.png: 
   [testng] 04:25:51,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:25:51,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:51,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_04-25-51.log]
   [testng] 04:25:51,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c939155 - End of configuration.
   [testng] [2024-12-25 04:25:52,026] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_one.png: 
   [testng] 04:25:52,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:25:52,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:52,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_04-25-52.log]
   [testng] 04:25:52,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7869dff1 - End of configuration.
   [testng] [2024-12-25 04:25:52,085] [pool-1-thread-2] Initializing /data/samples/daniel_coltri_two.png: 
   [testng] 04:25:52,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:25:52,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:25:52,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_04-25-52.log]
   [testng] 04:25:52,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79cd3161 - End of configuration.
   [testng] [2024-12-25 04:25:54,477] [pool-1-thread-2] Initializing /data/qa-7473/x.png: 
   [testng] [2024-12-25 04:25:54,958] [pool-1-thread-11] Initializing /data/samples/william_wong05.png: 
   [testng] [2024-12-25 04:25:54,993] [pool-1-thread-7] Initializing /data/samples/joanna_viera01.png: 
   [testng] [2024-12-25 04:25:55,037] [pool-1-thread-3] Initializing /data/samples/StarV838.png: 
   [testng] [2024-12-25 04:25:55,071] [pool-1-thread-6] Initializing /data/samples/william_wong01.png: 
   [testng] [2024-12-25 04:25:55,102] [pool-1-thread-4] Initializing /data/samples/PhugAnimation3.png: 
   [testng] [2024-12-25 04:25:55,135] [pool-1-thread-10] Initializing /data/colin/test.sfstdge.png: 
   [testng] [2024-12-25 04:25:55,166] [pool-1-thread-9] Initializing /data/samples/atom.png: 
   [testng] [2024-12-25 04:25:55,190] [pool-1-thread-5] Initializing /data/samples/chompy2.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 16 seconds
Finished: SUCCESS