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Started by upstream project "BIOFORMATS-test-repo" build number 34 originally caused by: Started by upstream project "Trigger" build number 38 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins17060459388287208701.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_4722_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:48:04,316 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:48:04,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:48:04,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:48:04,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:48:04,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:48:04,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:48:04,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:48:04,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:48:04,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:48:04,321 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:48:04,322 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:48:04,322 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:48:04,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:48:04,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:48:04,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:48:04,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:48:04,620 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:48:04,621 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:48:04,621 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:48:04,621 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:48:04,621 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:48:04,622 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:48:04,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 301 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-15 02:48:04,633] [main] java.version = 1.8.0_342 [testng] 02:48:04,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:48:04,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:04,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_02-48-04.log] [testng] 02:48:04,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-15 02:48:04,696] [main] testng.directory = /data [testng] [2024-04-15 02:48:04,696] [main] testng.configDirectory = /config [testng] [2024-04-15 02:48:04,710] [main] testng.multiplier = 1.0 [testng] [2024-04-15 02:48:04,711] [main] testng.in-memory = false [testng] [2024-04-15 02:48:04,711] [main] testng.allow-missing = false [testng] [2024-04-15 02:48:04,711] [main] user.language = fr [testng] [2024-04-15 02:48:04,711] [main] user.country = FR [testng] [2024-04-15 02:48:04,711] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-15 02:48:06,075] [main] ---------------------------------------- [testng] [2024-04-15 02:48:06,076] [main] Total files: 22 [testng] [2024-04-15 02:48:06,076] [main] Scan time: 1.364 s (62 ms/file) [testng] [2024-04-15 02:48:06,076] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-15 02:48:13,979] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: [testng] 02:48:13,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:48:13,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:13,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_02-48-13.log] [testng] 02:48:13,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6273ae5e - End of configuration. [testng] [2024-04-15 02:48:14,012] [pool-1-thread-12] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 02:48:14,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:48:14,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-15_02-48-14.log] [testng] 02:48:14,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@128c98a0 - End of configuration. [testng] [2024-04-15 02:48:14,041] [pool-1-thread-11] Initializing /data/converted/mitosis-test.tif: [testng] 02:48:14,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:48:14,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-15_02-48-14.log] [testng] 02:48:14,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4753aee6 - End of configuration. [testng] [2024-04-15 02:48:14,167] [pool-1-thread-10] Initializing /data/converted/clown.seq: [testng] 02:48:14,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:48:14,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-15_02-48-14.log] [testng] 02:48:14,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@945ecbf - End of configuration. [testng] [2024-04-15 02:48:14,181] [pool-1-thread-9] Initializing /data/alex/AFAset0003.ips: [testng] 02:48:14,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:48:14,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-15_02-48-14.log] [testng] 02:48:14,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fb01360 - End of configuration. [testng] [2024-04-15 02:48:14,196] [pool-1-thread-8] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 02:48:14,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:48:14,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_02-48-14.log] [testng] 02:48:14,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@422f9dd8 - End of configuration. [testng] [2024-04-15 02:48:14,264] [pool-1-thread-7] Initializing /data/samples/PROBE.TIF: [testng] 02:48:14,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:48:14,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_02-48-14.log] [testng] 02:48:14,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe94302 - End of configuration. [testng] [2024-04-15 02:48:14,288] [pool-1-thread-6] Initializing /data/converted/dub01.ipw: [testng] 02:48:14,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:48:14,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_02-48-14.log] [testng] 02:48:14,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69f8ea85 - End of configuration. [testng] [2024-04-15 02:48:14,319] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:48:14,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:48:14,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_02-48-14.log] [testng] 02:48:14,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c1c624a - End of configuration. [testng] [2024-04-15 02:48:14,349] [pool-1-thread-4] Initializing /data/xiuwen/head2.seq: [testng] 02:48:14,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:48:14,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_02-48-14.log] [testng] 02:48:14,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a6ddfa3 - End of configuration. [testng] [2024-04-15 02:48:14,470] [pool-1-thread-3] Initializing /data/converted/clown8c.ipw: [testng] 02:48:14,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:48:14,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_02-48-14.log] [testng] 02:48:14,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38dd4612 - End of configuration. [testng] [2024-04-15 02:48:14,487] [pool-1-thread-2] Initializing /data/converted/dub01.seq: [testng] 02:48:14,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:48:14,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:14,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_02-48-14.log] [testng] 02:48:14,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@607ace56 - End of configuration. [testng] [2024-04-15 02:48:16,547] [pool-1-thread-3] Initializing /data/converted/dub01.pic: [testng] [2024-04-15 02:48:16,585] [pool-1-thread-7] Initializing /data/converted/mitosis-test.seq: [testng] [2024-04-15 02:48:16,629] [pool-1-thread-2] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-04-15 02:48:16,687] [pool-1-thread-10] Initializing /data/converted/clown.tif: [testng] [2024-04-15 02:48:16,702] [pool-1-thread-6] Initializing /data/converted/clown.ipw: [testng] [2024-04-15 02:48:16,723] [pool-1-thread-12] Initializing /data/samples/HEART.SEQ: [testng] [2024-04-15 02:48:16,755] [pool-1-thread-5] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-04-15 02:48:16,793] [pool-1-thread-8] Initializing /data/converted/clown8c.tif: [testng] [2024-04-15 02:48:16,818] [pool-1-thread-11] Initializing /data/samples/TISSUE.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS