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Started by upstream project "BIOFORMATS-test-repo" build number 299 originally caused by: Started by upstream project "Trigger" build number 321 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13719666839860747008.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47275_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:53:09,294 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:53:09,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:53:09,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:53:09,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:53:09,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:53:09,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:53:09,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:53:09,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:53:09,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:53:09,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:53:09,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:53:09,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:53:09,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:53:09,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:53:09,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:53:09,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:53:09,497 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:53:09,497 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:53:09,498 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:53:09,498 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:53:09,498 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:53:09,499 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:53:09,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-26 00:53:09,508] [main] java.version = 21 [testng] 00:53:09,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:53:09,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:09,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-26_00-53-09.log] [testng] 00:53:09,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-26 00:53:09,557] [main] testng.directory = /data [testng] [2024-12-26 00:53:09,557] [main] testng.configDirectory = /config [testng] [2024-12-26 00:53:09,566] [main] testng.multiplier = 1.0 [testng] [2024-12-26 00:53:09,567] [main] testng.in-memory = false [testng] [2024-12-26 00:53:09,567] [main] testng.allow-missing = false [testng] [2024-12-26 00:53:09,567] [main] user.language = en [testng] [2024-12-26 00:53:09,567] [main] user.country = ${user.country} [testng] [2024-12-26 00:53:09,567] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-26 00:53:41,500] [main] ---------------------------------------- [testng] [2024-12-26 00:53:41,500] [main] Total files: 259 [testng] [2024-12-26 00:53:41,500] [main] Scan time: 31.932 s (123 ms/file) [testng] [2024-12-26 00:53:41,500] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-26 01:03:02,750] [pool-1-thread-1] Initializing /data/marc/V0606L.oib: [testng] 01:03:02,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:03:02,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:02,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-26_01-03-02.log] [testng] 01:03:02,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a97f371 - End of configuration. [testng] [2024-12-26 01:03:04,263] [pool-1-thread-12] Initializing /data/chris/missegragation-15.oib: [testng] 01:03:04,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:03:04,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:04,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-26_01-03-04.log] [testng] 01:03:04,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51ffc66a - End of configuration. [testng] [2024-12-26 01:03:04,726] [pool-1-thread-11] Initializing /data/johannes/step5b.bmp: [testng] 01:03:04,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:03:04,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:04,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-26_01-03-04.log] [testng] 01:03:04,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ac9189b - End of configuration. [testng] [2024-12-26 01:03:04,840] [pool-1-thread-10] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 01:03:04,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:03:04,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:04,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-26_01-03-04.log] [testng] 01:03:04,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c2eaf8f - End of configuration. [testng] [2024-12-26 01:03:05,681] [pool-1-thread-9] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 01:03:05,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:03:05,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:05,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-26_01-03-05.log] [testng] 01:03:05,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0acfc9 - End of configuration. [testng] [2024-12-26 01:03:07,056] [pool-1-thread-8] Initializing /data/brian/PA-GFP-3.oib: [testng] 01:03:07,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:03:07,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:07,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-26_01-03-07.log] [testng] 01:03:07,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@564cfb2a - End of configuration. [testng] [2024-12-26 01:03:07,581] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] 01:03:07,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:03:07,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:07,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-26_01-03-07.log] [testng] 01:03:07,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22da5fc4 - End of configuration. [testng] [2024-12-26 01:03:08,140] [pool-1-thread-6] Initializing /data/molly/11OCT8.OIF: [testng] 01:03:08,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:03:08,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:08,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-26_01-03-08.log] [testng] 01:03:08,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54fe9db0 - End of configuration. [testng] [2024-12-26 01:03:13,766] [pool-1-thread-5] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 01:03:13,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:03:13,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:13,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-26_01-03-13.log] [testng] 01:03:13,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41771c87 - End of configuration. [testng] [2024-12-26 01:03:14,530] [pool-1-thread-4] Initializing /data/simon/never_worked.oib: [testng] 01:03:14,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:03:14,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:14,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-26_01-03-14.log] [testng] 01:03:14,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1679d083 - End of configuration. [testng] [2024-12-26 01:03:15,128] [pool-1-thread-3] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] 01:03:15,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:03:15,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:15,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-26_01-03-15.log] [testng] 01:03:15,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46b36c28 - End of configuration. [testng] [2024-12-26 01:03:15,428] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] 01:03:15,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:03:15,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:15,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-26_01-03-15.log] [testng] 01:03:15,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66bdfd84 - End of configuration. [testng] [2024-12-26 01:03:20,621] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-12-26 01:03:23,118] [pool-1-thread-3] Initializing /data/christian/20min.oif: [testng] [2024-12-26 01:03:23,618] [pool-1-thread-12] Initializing /data/glen/singlesimul.oib: [testng] [2024-12-26 01:03:24,116] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2024-12-26 01:03:24,219] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-12-26 01:03:24,873] [pool-1-thread-7] Initializing /data/glen/singlesimul.oif: [testng] [2024-12-26 01:03:25,862] [pool-1-thread-8] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-12-26 01:03:28,421] [pool-1-thread-5] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-12-26 01:03:35,443] [pool-1-thread-12] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-12-26 01:04:04,850] [pool-1-thread-4] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-12-26 01:04:06,301] [pool-1-thread-11] Initializing /data/glen/singleseqframe.oif: [testng] [2024-12-26 01:04:09,087] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-12-26 01:04:10,947] [pool-1-thread-1] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-12-26 01:04:12,474] [pool-1-thread-3] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-12-26 01:04:14,932] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-12-26 01:04:17,869] [pool-1-thread-1] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-12-26 01:04:19,119] [pool-1-thread-3] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-12-26 01:04:23,948] [pool-1-thread-5] Initializing /data/monica/Image0056.oif: [testng] [2024-12-26 01:04:25,744] [pool-1-thread-8] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-12-26 01:04:27,541] [pool-1-thread-8] Initializing /data/glen/seqlinestack.oib: [testng] [2024-12-26 01:04:28,987] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-12-26 01:04:32,656] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-12-26 01:04:35,660] [pool-1-thread-8] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-12-26 01:04:38,366] [pool-1-thread-1] Initializing /data/glen/simulstack.oib: [testng] [2024-12-26 01:04:41,855] [pool-1-thread-7] Initializing /data/yasunori/series_1.oib: [testng] [2024-12-26 01:04:46,720] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-12-26 01:04:48,789] [pool-1-thread-1] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-12-26 01:04:51,911] [pool-1-thread-7] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-12-26 01:04:55,374] [pool-1-thread-8] Initializing /data/glen/4205basal106072.oif: [testng] [2024-12-26 01:05:05,237] [pool-1-thread-7] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-12-26 01:05:08,536] [pool-1-thread-11] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-12-26 01:05:14,806] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-12-26 01:05:16,424] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-12-26 01:05:22,300] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] [2024-12-26 01:05:22,464] [pool-1-thread-7] Initializing /data/aryeh/1h.oib: [testng] [2024-12-26 01:05:24,145] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oif: [testng] [2024-12-26 01:05:35,857] [pool-1-thread-11] Initializing /data/molly/11OCT11.OIF: [testng] [2024-12-26 01:05:59,328] [pool-1-thread-7] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-12-26 01:06:02,330] [pool-1-thread-10] Initializing /data/david/Image0016.oib: [testng] [2024-12-26 01:06:07,970] [pool-1-thread-7] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-12-26 01:06:09,232] [pool-1-thread-10] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-12-26 01:06:16,763] [pool-1-thread-7] Initializing /data/tom/zseries-test.oib: [testng] [2024-12-26 01:06:20,824] [pool-1-thread-10] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-12-26 01:06:27,715] [pool-1-thread-10] Initializing /data/kay/IM2pg.oib: [testng] [2024-12-26 01:06:28,708] [pool-1-thread-7] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-12-26 01:06:34,770] [pool-1-thread-1] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-12-26 01:06:37,373] [pool-1-thread-10] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-12-26 01:06:41,166] [pool-1-thread-1] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-12-26 01:06:43,046] [pool-1-thread-10] Initializing /data/brian/Kaede15.oib: [testng] [2024-12-26 01:06:46,395] [pool-1-thread-1] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-12-26 01:06:52,151] [pool-1-thread-10] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-12-26 01:06:58,054] [pool-1-thread-10] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-12-26 01:07:07,173] [pool-1-thread-10] Initializing /data/molly/11OCT2.OIF: [testng] [2024-12-26 01:08:18,798] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-12-26 01:08:47,908] [pool-1-thread-4] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-12-26 01:08:52,416] [pool-1-thread-4] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-12-26 01:08:58,790] [pool-1-thread-4] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-12-26 01:10:02,935] [pool-1-thread-1] Initializing /data/molly/11OCT3.OIF: [testng] [2024-12-26 01:13:42,290] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-12-26 01:13:50,526] [pool-1-thread-9] Initializing /data/yoshihito/XY.oif: [testng] [2024-12-26 01:14:27,115] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-12-26 01:14:35,427] [pool-1-thread-9] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-12-26 01:14:44,050] [pool-1-thread-9] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-12-26 01:14:51,298] [pool-1-thread-9] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-12-26 01:15:01,831] [pool-1-thread-9] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-12-26 01:15:10,365] [pool-1-thread-9] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-12-26 01:21:40,146] [pool-1-thread-9] Initializing /data/glen/Null file/test change.oif: [testng] [2024-12-26 01:22:49,990] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-12-26 01:22:57,651] [pool-1-thread-9] Initializing /data/molly/11OCT4.OIF: [testng] [2024-12-26 01:23:29,480] [pool-1-thread-4] Initializing /data/glen/singleseqline.oif: [testng] [2024-12-26 01:23:32,425] [pool-1-thread-2] Initializing /data/molly/11OCT6.OIF: [testng] [2024-12-26 01:25:07,166] [pool-1-thread-4] Initializing /data/david/Image0016.oif: [testng] [2024-12-26 01:27:29,316] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-12-26 01:27:41,158] [pool-1-thread-4] Initializing /data/brian/lambda02nm.oib: [testng] [2024-12-26 01:27:55,279] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-12-26 01:28:06,880] [pool-1-thread-4] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-12-26 01:29:18,933] [pool-1-thread-4] Initializing /data/glen/Image0002.oif: [testng] [2024-12-26 01:30:22,130] [pool-1-thread-7] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-12-26 01:31:16,588] [pool-1-thread-7] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-12-26 01:31:26,796] [pool-1-thread-7] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-12-26 01:34:53,924] [pool-1-thread-6] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-12-26 01:35:04,023] [pool-1-thread-6] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-12-26 01:35:14,502] [pool-1-thread-6] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-12-26 01:35:46,633] [pool-1-thread-3] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-12-26 01:36:25,444] [pool-1-thread-3] Initializing /data/glen/notsaturated.oif: [testng] [2024-12-26 01:36:37,854] [pool-1-thread-6] Initializing /data/brian/FLIP.oib: [testng] [2024-12-26 01:36:49,061] [pool-1-thread-6] Initializing /data/sten/01.oib: [testng] [2024-12-26 01:36:58,130] [pool-1-thread-6] Initializing /data/pedro/plv-test.oib: [testng] [2024-12-26 01:37:08,202] [pool-1-thread-6] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-12-26 01:37:17,948] [pool-1-thread-6] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-12-26 01:37:27,904] [pool-1-thread-6] Initializing /data/glen/simulstack.oif: [testng] [2024-12-26 01:42:13,468] [pool-1-thread-11] Initializing /data/glen/notsaturated.oib: [testng] [2024-12-26 01:42:21,499] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-12-26 01:42:32,101] [pool-1-thread-11] Initializing /data/molly/11OCT9.OIF: [testng] [2024-12-26 01:43:46,560] [pool-1-thread-8] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-12-26 01:43:59,211] [pool-1-thread-8] Initializing /data/glen/singleseqline.oib: [testng] [2024-12-26 01:44:07,191] [pool-1-thread-8] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-12-26 01:44:18,466] [pool-1-thread-8] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-12-26 01:44:27,260] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-12-26 01:44:29,843] [pool-1-thread-5] Initializing /data/johannes/step4b.bmp: [testng] [2024-12-26 01:44:33,508] [pool-1-thread-5] Initializing /data/marc/V0606J.oib: [testng] [2024-12-26 01:44:40,157] [pool-1-thread-8] Initializing /data/yoshihito/XY.oib: [testng] [2024-12-26 01:44:48,295] [pool-1-thread-8] Initializing /data/tom/RGB-1.avi: [testng] [2024-12-26 01:44:53,683] [pool-1-thread-8] Initializing /data/aryeh/control_test.oib: [testng] [2024-12-26 01:45:07,192] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-12-26 01:47:25,311] [pool-1-thread-8] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-12-26 01:47:32,268] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-12-26 01:47:38,623] [pool-1-thread-8] Initializing /data/jae/Image0001.oib: [testng] [2024-12-26 01:47:46,356] [pool-1-thread-8] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-12-26 01:47:54,679] [pool-1-thread-8] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-12-26 01:48:04,362] [pool-1-thread-8] Initializing /data/johannes/step3.bmp: [testng] [2024-12-26 01:48:07,584] [pool-1-thread-8] Initializing /data/molly/11OCT10.OIF: [testng] [2024-12-26 01:48:56,214] [pool-1-thread-3] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-12-26 01:49:04,858] [pool-1-thread-3] Initializing /data/allan/62909#1.oib: [testng] [2024-12-26 01:49:10,579] [pool-1-thread-3] Initializing /data/molly/11OCT5.OIF: [testng] [2024-12-26 01:55:09,954] [pool-1-thread-9] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-12-26 01:55:18,226] [pool-1-thread-9] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-12-26 01:55:27,807] [pool-1-thread-9] Initializing /data/simon/used_to_work.oib: [testng] [2024-12-26 01:55:36,390] [pool-1-thread-9] Initializing /data/karl/Image0009.oib: [testng] [2024-12-26 01:55:43,797] [pool-1-thread-9] Initializing /data/michael/CELL3.oib: [testng] [2024-12-26 01:55:50,892] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-12-26 01:55:58,360] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-12-26 01:56:48,250] [pool-1-thread-4] Initializing /data/molly/11OCT7.OIF: [testng] [2024-12-26 01:59:29,800] [pool-1-thread-9] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-12-26 02:00:02,307] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-12-26 02:00:03,102] [pool-1-thread-2] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-12-26 02:00:14,063] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-12-26 02:00:21,313] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-12-26 02:00:29,955] [pool-1-thread-6] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-12-26 02:01:09,078] [pool-1-thread-6] Initializing /data/glen/singleseqframe.oib: [testng] [2024-12-26 02:01:14,381] [pool-1-thread-6] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-12-26 02:03:53,643] [pool-1-thread-10] Initializing /data/johannes/step4.bmp: [testng] 02:31:48,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:31:48,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:48,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-26_02-31-48.log] [testng] 02:31:48,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bcf9149 - End of configuration. [testng] 03:00:56,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:00:56,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:56,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-26_03-00-56.log] [testng] 03:00:56,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad99197 - End of configuration. [testng] 03:47:58,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:47:58,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:47:58,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-26_03-47-58.log] [testng] 03:47:58,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c15d0c6 - End of configuration. [testng] 03:55:27,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:55:27,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:55:27,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-26_03-55-27.log] [testng] 03:55:27,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27a9fe9e - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 182 minutes 21 seconds Finished: SUCCESS