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Started by upstream project "BIOFORMATS-test-repo" build number 300 originally caused by: Started by upstream project "Trigger" build number 322 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6152315003572313272.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47413_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:25:46,093 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:25:46,095 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:25:46,095 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:25:46,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:25:46,096 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:25:46,096 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:25:46,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:25:46,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:25:46,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:25:46,097 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:25:46,097 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:25:46,097 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:25:46,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:25:46,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:25:46,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:25:46,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:25:46,370 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:25:46,371 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:25:46,371 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:25:46,371 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:25:46,371 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:25:46,372 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:25:46,372 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 275 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-27 00:25:46,382] [main] java.version = 1.8.0_342 [testng] 00:25:46,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:25:46,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:46,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-27_00-25-46.log] [testng] 00:25:46,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-27 00:25:46,436] [main] testng.directory = /data [testng] [2024-12-27 00:25:46,436] [main] testng.configDirectory = /config [testng] [2024-12-27 00:25:46,448] [main] testng.multiplier = 1.0 [testng] [2024-12-27 00:25:46,448] [main] testng.in-memory = false [testng] [2024-12-27 00:25:46,448] [main] testng.allow-missing = false [testng] [2024-12-27 00:25:46,448] [main] user.language = en [testng] [2024-12-27 00:25:46,448] [main] user.country = ${user.country} [testng] [2024-12-27 00:25:46,448] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-27 00:25:47,002] [main] ---------------------------------------- [testng] [2024-12-27 00:25:47,003] [main] Total files: 21 [testng] [2024-12-27 00:25:47,003] [main] Scan time: 0.553 s (26 ms/file) [testng] [2024-12-27 00:25:47,003] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-27 00:25:56,970] [pool-1-thread-1] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:25:56,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:25:56,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:56,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-27_00-25-56.log] [testng] 00:25:56,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11d7f6b7 - End of configuration. [testng] [2024-12-27 00:25:57,635] [pool-1-thread-12] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:25:57,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:25:57,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:57,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-27_00-25-57.log] [testng] 00:25:57,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@448551a5 - End of configuration. [testng] [2024-12-27 00:25:58,198] [pool-1-thread-11] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:25:58,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:25:58,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:58,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-27_00-25-58.log] [testng] 00:25:58,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56f78f24 - End of configuration. [testng] [2024-12-27 00:25:58,788] [pool-1-thread-10] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:25:58,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:25:58,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:58,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-27_00-25-58.log] [testng] 00:25:58,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a586d6a - End of configuration. [testng] [2024-12-27 00:25:59,340] [pool-1-thread-9] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:25:59,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:25:59,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:59,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-27_00-25-59.log] [testng] 00:25:59,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12133707 - End of configuration. [testng] [2024-12-27 00:25:59,901] [pool-1-thread-8] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:25:59,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:25:59,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:59,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-27_00-25-59.log] [testng] 00:25:59,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77056988 - End of configuration. [testng] [2024-12-27 00:26:00,319] [pool-1-thread-7] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:26:00,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:26:00,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:00,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-27_00-26-00.log] [testng] 00:26:00,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62ea36d8 - End of configuration. [testng] [2024-12-27 00:26:00,588] [pool-1-thread-6] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:26:00,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:26:00,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:00,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-27_00-26-00.log] [testng] 00:26:00,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620644a8 - End of configuration. [testng] [2024-12-27 00:26:00,847] [pool-1-thread-5] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:26:00,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:26:00,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:00,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-27_00-26-00.log] [testng] 00:26:00,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25c92fa2 - End of configuration. [testng] [2024-12-27 00:26:01,131] [pool-1-thread-4] Initializing /data/venu/Kontrolle0002.lim: [testng] 00:26:01,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:26:01,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:01,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-27_00-26-01.log] [testng] 00:26:01,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eae0383 - End of configuration. [testng] [2024-12-27 00:26:01,427] [pool-1-thread-3] Initializing /data/venu/Kontrolle0021.lim: [testng] 00:26:01,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:26:01,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:01,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-27_00-26-01.log] [testng] 00:26:01,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d20114 - End of configuration. [testng] [2024-12-27 00:26:01,691] [pool-1-thread-2] Initializing /data/venu/Kontrolle0012.lim: [testng] 00:26:01,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:26:01,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:01,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-27_00-26-01.log] [testng] 00:26:01,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@402a87d0 - End of configuration. [testng] [2024-12-27 00:26:07,461] [pool-1-thread-6] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-12-27 00:26:07,721] [pool-1-thread-1] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-12-27 00:26:07,986] [pool-1-thread-11] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-12-27 00:26:08,278] [pool-1-thread-8] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-12-27 00:26:08,548] [pool-1-thread-3] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-12-27 00:26:08,806] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] [2024-12-27 00:26:09,069] [pool-1-thread-2] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-12-27 00:26:09,352] [pool-1-thread-10] Initializing /data/venu/Kontrolle0018.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS