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Started by upstream project "BIOFORMATS-test-repo" build number 35 originally caused by: Started by upstream project "Trigger" build number 39 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15264542637112853648.sh + '[' lim = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_4743_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 12:07:04,887 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 12:07:04,889 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 12:07:04,889 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:07:04,890 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:07:04,890 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:07:04,890 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:07:04,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:07:04,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:07:04,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:07:04,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:07:04,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:07:04,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:07:05,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:07:05,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:07:05,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:07:05,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:07:05,172 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:07:05,172 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:07:05,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:07:05,173 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:07:05,173 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 12:07:05,174 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 12:07:05,174 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-15 12:07:05,184] [main] java.version = 1.8.0_342 [testng] 12:07:05,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:07:05,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:05,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_12-07-05.log] [testng] 12:07:05,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-15 12:07:05,241] [main] testng.directory = /data [testng] [2024-04-15 12:07:05,241] [main] testng.configDirectory = /config [testng] [2024-04-15 12:07:05,255] [main] testng.multiplier = 1.0 [testng] [2024-04-15 12:07:05,255] [main] testng.in-memory = false [testng] [2024-04-15 12:07:05,255] [main] testng.allow-missing = false [testng] [2024-04-15 12:07:05,255] [main] user.language = fr [testng] [2024-04-15 12:07:05,255] [main] user.country = FR [testng] [2024-04-15 12:07:05,255] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-15 12:07:05,710] [main] ---------------------------------------- [testng] [2024-04-15 12:07:05,710] [main] Total files: 21 [testng] [2024-04-15 12:07:05,711] [main] Scan time: 0.455 s (21 ms/file) [testng] [2024-04-15 12:07:05,711] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-15 12:07:07,101] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 12:07:07,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:07:07,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_12-07-07.log] [testng] 12:07:07,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c206721 - End of configuration. [testng] [2024-04-15 12:07:07,153] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 12:07:07,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:07:07,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-15_12-07-07.log] [testng] 12:07:07,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d4e78c3 - End of configuration. [testng] [2024-04-15 12:07:07,167] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 12:07:07,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:07:07,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-15_12-07-07.log] [testng] 12:07:07,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5910eb7e - End of configuration. [testng] [2024-04-15 12:07:07,182] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 12:07:07,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:07:07,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-15_12-07-07.log] [testng] 12:07:07,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@971fb13 - End of configuration. [testng] [2024-04-15 12:07:07,197] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 12:07:07,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:07:07,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-15_12-07-07.log] [testng] 12:07:07,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@786f8324 - End of configuration. [testng] [2024-04-15 12:07:07,216] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 12:07:07,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:07:07,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_12-07-07.log] [testng] 12:07:07,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59392a0d - End of configuration. [testng] [2024-04-15 12:07:07,236] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 12:07:07,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:07:07,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_12-07-07.log] [testng] 12:07:07,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459a7a1f - End of configuration. [testng] [2024-04-15 12:07:07,251] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 12:07:07,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:07:07,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_12-07-07.log] [testng] 12:07:07,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35261543 - End of configuration. [testng] [2024-04-15 12:07:07,275] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 12:07:07,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:07:07,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_12-07-07.log] [testng] 12:07:07,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@602edd28 - End of configuration. [testng] [2024-04-15 12:07:07,294] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 12:07:07,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:07:07,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_12-07-07.log] [testng] 12:07:07,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a3324b - End of configuration. [testng] [2024-04-15 12:07:07,309] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 12:07:07,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:07:07,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_12-07-07.log] [testng] 12:07:07,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a1f0d1 - End of configuration. [testng] [2024-04-15 12:07:07,329] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 12:07:07,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:07:07,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:07:07,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_12-07-07.log] [testng] 12:07:07,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b4d23c - End of configuration. [testng] [2024-04-15 12:07:09,766] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-04-15 12:07:09,778] [pool-1-thread-5] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-04-15 12:07:09,791] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-04-15 12:07:09,803] [pool-1-thread-6] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-04-15 12:07:09,813] [pool-1-thread-2] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-04-15 12:07:09,832] [pool-1-thread-12] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-04-15 12:07:09,853] [pool-1-thread-1] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-04-15 12:07:09,873] [pool-1-thread-4] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS