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Started by upstream project "BIOFORMATS-test-repo" build number 300 originally caused by: Started by upstream project "Trigger" build number 322 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins12220998718675519586.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47487_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:19:35,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:19:35,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:19:35,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:19:35,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:19:35,532 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:19:35,532 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:19:35,532 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:19:35,532 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:19:35,533 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 02:19:35,533 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 02:19:35,534 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 610 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-27 02:19:35,544] [main] java.version = 1.8.0_342 [testng] 02:19:35,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:19:35,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:35,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-27_02-19-35.log] [testng] 02:19:35,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-27 02:19:35,754] [main] testng.directory = /data [testng] [2024-12-27 02:19:35,755] [main] testng.configDirectory = /config [testng] [2024-12-27 02:19:35,773] [main] testng.multiplier = 1.0 [testng] [2024-12-27 02:19:35,774] [main] testng.in-memory = false [testng] [2024-12-27 02:19:35,774] [main] testng.allow-missing = false [testng] [2024-12-27 02:19:35,774] [main] user.language = en [testng] [2024-12-27 02:19:35,774] [main] user.country = ${user.country} [testng] [2024-12-27 02:19:35,774] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-27 02:22:40,194] [main] ---------------------------------------- [testng] [2024-12-27 02:22:40,194] [main] Total files: 268 [testng] [2024-12-27 02:22:40,194] [main] Scan time: 184.42 s (688 ms/file) [testng] [2024-12-27 02:22:40,194] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-27 02:28:53,338] [pool-1-thread-1] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] 02:28:53,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:28:53,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:53,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-27_02-28-53.log] [testng] 02:28:53,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25f44fde - End of configuration. [testng] [2024-12-27 02:28:54,433] [pool-1-thread-12] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] 02:28:54,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:28:54,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:54,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-27_02-28-54.log] [testng] 02:28:54,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e5db8f8 - End of configuration. [testng] [2024-12-27 02:28:56,960] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] 02:28:56,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:28:56,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:56,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-27_02-28-56.log] [testng] 02:28:56,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57a2c1ad - End of configuration. [testng] [2024-12-27 02:28:57,777] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] 02:28:57,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:28:57,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:57,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-27_02-28-57.log] [testng] 02:28:57,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31b39aeb - End of configuration. [testng] [2024-12-27 02:28:58,452] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] 02:28:58,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:28:58,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:58,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-27_02-28-58.log] [testng] 02:28:58,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6357d72a - End of configuration. [testng] [2024-12-27 02:28:59,071] [pool-1-thread-8] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] 02:28:59,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:28:59,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:59,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-27_02-28-59.log] [testng] 02:28:59,072 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bf5ea8e - End of configuration. [testng] [2024-12-27 02:29:01,612] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] 02:29:01,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:29:01,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:01,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-27_02-29-01.log] [testng] 02:29:01,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bafdb37 - End of configuration. [testng] [2024-12-27 02:29:02,366] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] 02:29:02,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:29:02,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:02,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-27_02-29-02.log] [testng] 02:29:02,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fcf760b - End of configuration. [testng] [2024-12-27 02:29:02,964] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] 02:29:02,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:29:02,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:02,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-27_02-29-02.log] [testng] 02:29:02,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6056efe6 - End of configuration. [testng] [2024-12-27 02:29:04,005] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 02:29:04,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:29:04,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:04,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-27_02-29-04.log] [testng] 02:29:04,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d1d1ee - End of configuration. [testng] [2024-12-27 02:29:05,116] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] 02:29:05,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:29:05,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:05,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-27_02-29-05.log] [testng] 02:29:05,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@472df2ad - End of configuration. [testng] [2024-12-27 02:29:06,179] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] 02:29:06,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:29:06,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:06,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-27_02-29-06.log] [testng] 02:29:06,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39de8638 - End of configuration. [testng] [2024-12-27 02:29:12,727] [pool-1-thread-6] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-12-27 02:29:15,119] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-12-27 02:29:16,581] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-12-27 02:29:17,936] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-12-27 02:29:19,148] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-12-27 02:29:19,610] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-12-27 02:29:20,208] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-12-27 02:29:21,396] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-12-27 02:29:27,046] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-12-27 02:29:30,945] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-12-27 02:29:32,131] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-12-27 02:29:33,450] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-12-27 02:29:34,358] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-12-27 02:29:35,512] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-12-27 02:29:36,178] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-12-27 02:29:36,450] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-12-27 02:29:39,039] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-12-27 02:29:44,256] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-12-27 02:29:47,584] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-12-27 02:29:49,253] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-12-27 02:29:50,910] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-12-27 02:29:51,626] [pool-1-thread-11] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-12-27 02:29:52,644] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-12-27 02:29:53,554] [pool-1-thread-4] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-12-27 02:29:54,478] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-12-27 02:29:57,969] [pool-1-thread-7] Initializing /data/steve/FITS/M51.fits: [testng] [2024-12-27 02:29:58,211] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-12-27 02:30:00,390] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-12-27 02:30:01,267] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-12-27 02:30:02,506] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-12-27 02:30:03,581] [pool-1-thread-5] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-12-27 02:30:05,323] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-12-27 02:30:07,367] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-12-27 02:30:07,986] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-12-27 02:30:08,651] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-12-27 02:30:09,273] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-12-27 02:30:10,015] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-12-27 02:30:11,610] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-12-27 02:30:15,099] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-12-27 02:30:15,294] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-12-27 02:30:15,641] [pool-1-thread-2] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-12-27 02:30:19,165] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-12-27 02:30:19,802] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-12-27 02:30:20,821] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-12-27 02:30:23,465] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-12-27 02:30:24,416] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-12-27 02:30:24,982] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-12-27 02:30:27,330] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-12-27 02:30:29,627] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-12-27 02:30:32,160] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-12-27 02:30:36,737] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-12-27 02:30:37,736] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-12-27 02:30:39,074] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-12-27 02:30:39,788] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-12-27 02:30:40,524] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-12-27 02:30:41,232] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-12-27 02:30:42,813] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-12-27 02:30:44,654] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-12-27 02:30:46,656] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-12-27 02:30:47,453] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-12-27 02:30:50,277] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-12-27 02:30:51,401] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-12-27 02:30:52,006] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-12-27 02:30:52,400] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-12-27 02:30:52,998] [pool-1-thread-7] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-12-27 02:30:54,163] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-12-27 02:30:56,091] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-12-27 02:30:56,460] [pool-1-thread-3] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-12-27 02:31:00,597] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-12-27 02:31:01,294] [pool-1-thread-5] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-12-27 02:31:02,901] [pool-1-thread-11] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-12-27 02:31:05,656] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-12-27 02:31:06,391] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-12-27 02:31:07,089] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-12-27 02:31:07,557] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-12-27 02:31:09,418] [pool-1-thread-1] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-12-27 02:31:12,061] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-12-27 02:31:18,057] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-12-27 02:31:18,773] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-12-27 02:31:22,409] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-12-27 02:31:23,801] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-12-27 02:31:24,352] [pool-1-thread-8] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-12-27 02:31:25,315] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-12-27 02:31:29,820] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-12-27 02:31:31,447] [pool-1-thread-6] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-12-27 02:31:37,135] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-12-27 02:31:38,430] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-12-27 02:31:39,639] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-12-27 02:31:40,115] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-12-27 02:31:40,859] [pool-1-thread-1] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-12-27 02:31:43,309] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-12-27 02:31:44,045] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-12-27 02:31:44,883] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-12-27 02:31:46,389] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-12-27 02:31:46,911] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-12-27 02:31:51,169] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-12-27 02:31:54,495] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-12-27 02:31:58,285] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-12-27 02:32:01,665] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-12-27 02:32:06,811] [pool-1-thread-11] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-12-27 02:32:11,513] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-12-27 02:32:12,581] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-12-27 02:32:13,799] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-12-27 02:32:17,724] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-12-27 02:32:18,867] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-12-27 02:32:20,835] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-12-27 02:32:26,819] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-12-27 02:32:30,272] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-12-27 02:32:33,575] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-12-27 02:32:36,357] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-12-27 02:32:39,883] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-12-27 02:32:42,411] [pool-1-thread-7] Initializing /data/steve/FITS/M13.fits: [testng] [2024-12-27 02:32:42,627] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-12-27 02:32:43,434] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-12-27 02:32:44,487] [pool-1-thread-2] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-12-27 02:32:46,375] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-12-27 02:32:50,858] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-12-27 02:32:53,646] [pool-1-thread-2] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-12-27 02:32:56,702] [pool-1-thread-6] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-12-27 02:33:00,175] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-12-27 02:33:03,079] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-12-27 02:33:03,831] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-12-27 02:33:05,354] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-12-27 02:33:07,439] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-12-27 02:33:10,470] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-12-27 02:33:11,245] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-12-27 02:33:11,986] [pool-1-thread-7] Initializing /data/steve/FITS/M104.fits: [testng] [2024-12-27 02:33:13,021] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-12-27 02:33:15,686] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-12-27 02:33:20,322] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-12-27 02:33:24,233] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-12-27 02:33:28,808] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-12-27 02:33:30,117] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-12-27 02:33:30,512] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-12-27 02:33:32,966] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-12-27 02:33:35,190] [pool-1-thread-2] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-12-27 02:33:38,391] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-12-27 02:33:39,470] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-12-27 02:33:40,531] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-12-27 02:33:44,844] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-12-27 02:33:46,760] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-12-27 02:33:47,658] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-12-27 02:33:51,438] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-12-27 02:33:53,450] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-12-27 02:33:56,578] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-12-27 02:33:57,537] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-12-27 02:33:59,224] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-12-27 02:34:02,245] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 minutes 54 seconds Finished: SUCCESS