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Started by upstream project "BIOFORMATS-test-repo" build number 300 originally caused by: Started by upstream project "Trigger" build number 322 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins365236882658696856.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47527_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:32:05,333 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:32:05,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:32:05,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:32:05,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:32:05,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:32:05,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:32:05,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:32:05,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:32:05,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:32:05,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:32:05,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:32:05,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:32:05,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:32:05,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:32:05,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:32:05,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:32:05,591 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:32:05,591 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:32:05,591 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:32:05,592 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:32:05,592 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:32:05,593 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:32:05,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-27 04:32:05,602] [main] java.version = 1.8.0_342 [testng] 04:32:05,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:32:05,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:32:05,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-27_04-32-05.log] [testng] 04:32:05,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-27 04:32:05,654] [main] testng.directory = /data [testng] [2024-12-27 04:32:05,654] [main] testng.configDirectory = /config [testng] [2024-12-27 04:32:05,666] [main] testng.multiplier = 1.0 [testng] [2024-12-27 04:32:05,666] [main] testng.in-memory = false [testng] [2024-12-27 04:32:05,666] [main] testng.allow-missing = false [testng] [2024-12-27 04:32:05,666] [main] user.language = en [testng] [2024-12-27 04:32:05,666] [main] user.country = ${user.country} [testng] [2024-12-27 04:32:05,667] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-27 04:35:23,786] [main] ---------------------------------------- [testng] [2024-12-27 04:35:23,786] [main] Total files: 15735 [testng] [2024-12-27 04:35:23,787] [main] Scan time: 198.119 s (12 ms/file) [testng] [2024-12-27 04:35:23,787] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-27 04:38:36,138] [pool-1-thread-1] Initializing /data/converted/converted/damian-compressed.tif: [testng] 04:38:36,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:38:36,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:36,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-27_04-38-36.log] [testng] 04:38:36,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e0ebbfb - End of configuration. [testng] [2024-12-27 04:38:37,809] [pool-1-thread-12] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] 04:38:37,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:38:37,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:37,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-27_04-38-37.log] [testng] 04:38:37,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68db73aa - End of configuration. [testng] [2024-12-27 04:38:42,073] [pool-1-thread-11] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] 04:38:42,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:38:42,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:42,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-27_04-38-42.log] [testng] 04:38:42,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@81dcaa7 - End of configuration. [testng] [2024-12-27 04:38:42,997] [pool-1-thread-10] Initializing /data/converted/karsten/Bild1.tif: [testng] 04:38:42,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:38:42,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:42,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-27_04-38-42.log] [testng] 04:38:42,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f01d5a - End of configuration. [testng] [2024-12-27 04:38:43,970] [pool-1-thread-9] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 04:38:43,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:38:43,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:43,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-27_04-38-43.log] [testng] 04:38:43,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34b3bf25 - End of configuration. [testng] [2024-12-27 04:38:45,102] [pool-1-thread-8] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] 04:38:45,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:38:45,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:45,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-27_04-38-45.log] [testng] 04:38:45,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7716bab3 - End of configuration. [testng] [2024-12-27 04:38:46,339] [pool-1-thread-7] Initializing /data/converted/darren/section0002_w1.tif: [testng] 04:38:46,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:38:46,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:46,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-27_04-38-46.log] [testng] 04:38:46,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73c1b169 - End of configuration. [testng] [2024-12-27 04:38:47,793] [pool-1-thread-6] Initializing /data/scott/Slide133-04.tif: [testng] 04:38:47,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:38:47,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:47,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-27_04-38-47.log] [testng] 04:38:47,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c46c072 - End of configuration. [testng] [2024-12-27 04:38:49,524] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] 04:38:49,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:38:49,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:49,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-27_04-38-49.log] [testng] 04:38:49,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4770057 - End of configuration. [testng] [2024-12-27 04:38:53,436] [pool-1-thread-4] Initializing /data/converted/lior/live+cf5b.tif: [testng] 04:38:53,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:38:53,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:53,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-27_04-38-53.log] [testng] 04:38:53,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bac1297 - End of configuration. [testng] [2024-12-27 04:38:55,168] [pool-1-thread-3] Initializing /data/converted/karsten/Bild2.tif: [testng] 04:38:55,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:38:55,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:55,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-27_04-38-55.log] [testng] 04:38:55,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fc5214a - End of configuration. [testng] [2024-12-27 04:38:56,542] [pool-1-thread-2] Initializing /data/converted/converted/2chz.tif: [testng] 04:38:56,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:38:56,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:56,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-27_04-38-56.log] [testng] 04:38:56,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34088f86 - End of configuration. [testng] [2024-12-27 04:39:24,934] [pool-1-thread-1] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-27 04:39:32,775] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-12-27 04:39:34,602] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-27 04:39:36,630] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-12-27 04:39:42,203] [pool-1-thread-3] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-27 04:39:44,197] [pool-1-thread-10] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-12-27 04:39:54,609] [pool-1-thread-8] Initializing /data/converted/michel/d.tif: [testng] [2024-12-27 04:39:56,693] [pool-1-thread-4] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-12-27 04:40:09,017] [pool-1-thread-11] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-27 04:40:41,220] [pool-1-thread-8] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-12-27 04:41:04,239] [pool-1-thread-10] Initializing /data/scott/Slide133-01.tif: [testng] [2024-12-27 04:41:10,539] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-27 04:41:38,840] [pool-1-thread-10] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-12-27 04:42:06,892] [pool-1-thread-10] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-12-27 04:42:32,675] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-27 04:42:37,082] [pool-1-thread-10] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-12-27 04:42:51,181] [pool-1-thread-10] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-27 04:43:25,897] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-27 04:44:25,276] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-27 04:47:47,907] [pool-1-thread-2] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-27 04:47:53,802] [pool-1-thread-5] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-27 04:48:23,176] [pool-1-thread-5] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-27 04:48:33,485] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-27 04:48:35,468] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-27 04:48:48,492] [pool-1-thread-6] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-12-27 04:50:41,924] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-12-27 04:51:17,951] [pool-1-thread-6] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-12-27 04:51:42,788] [pool-1-thread-3] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-12-27 04:51:59,324] [pool-1-thread-6] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-12-27 04:52:14,375] [pool-1-thread-2] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-12-27 04:52:53,914] [pool-1-thread-2] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-27 04:53:00,896] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-12-27 04:54:46,651] [pool-1-thread-2] Initializing /data/converted/converted/damian.tif: [testng] [2024-12-27 04:55:07,111] [pool-1-thread-2] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-27 04:57:45,440] [pool-1-thread-2] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-12-27 04:57:51,491] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-12-27 04:58:25,450] [pool-1-thread-2] Initializing /data/scott/Slide133-08.tif: [testng] [2024-12-27 04:58:34,514] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-27 04:58:53,679] [pool-1-thread-12] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-12-27 04:59:12,631] [pool-1-thread-2] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-27 04:59:22,677] [pool-1-thread-8] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-27 05:00:02,808] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-27 05:02:47,610] [pool-1-thread-12] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-12-27 05:04:38,494] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-27 05:04:41,470] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-12-27 05:05:38,360] [pool-1-thread-3] Initializing /data/converted/michel/c.tif: [testng] [2024-12-27 05:06:46,087] [pool-1-thread-3] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-27 05:07:03,647] [pool-1-thread-8] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-12-27 05:07:40,866] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-27 05:09:15,725] [pool-1-thread-9] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-12-27 05:09:33,262] [pool-1-thread-12] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-27 05:10:59,567] [pool-1-thread-2] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-12-27 05:12:24,581] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-27 05:13:01,128] [pool-1-thread-7] Initializing /data/converted/dietmar/138.tif: [testng] [2024-12-27 05:13:21,785] [pool-1-thread-11] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-12-27 05:14:16,450] [pool-1-thread-11] Initializing /data/converted/sebastien/test.tif: [testng] [2024-12-27 05:17:16,272] [pool-1-thread-4] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-27 05:18:23,507] [pool-1-thread-8] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-27 05:21:06,642] [pool-1-thread-4] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-27 05:21:19,173] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-27 05:22:24,552] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-27 05:22:41,105] [pool-1-thread-3] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-27 05:25:24,638] [pool-1-thread-2] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-27 05:26:12,334] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-27 05:26:26,930] [pool-1-thread-2] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-27 05:28:20,310] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-27 05:28:51,091] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-12-27 05:33:00,072] [pool-1-thread-2] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-12-27 05:33:48,126] [pool-1-thread-2] Initializing /data/converted/michel/b.tif: [testng] [2024-12-27 05:34:14,732] [pool-1-thread-4] Initializing /data/converted/michel/e.tif: [testng] [2024-12-27 05:34:48,495] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-27 05:34:51,516] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-27 05:35:45,757] [pool-1-thread-4] Initializing /data/scott/Slide133-11.tif: [testng] [2024-12-27 05:36:31,117] [pool-1-thread-4] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-12-27 05:37:11,695] [pool-1-thread-4] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-12-27 05:38:04,269] [pool-1-thread-7] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-12-27 05:38:10,270] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-27 05:38:50,653] [pool-1-thread-4] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-27 05:39:31,787] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-12-27 05:40:31,368] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-12-27 05:40:54,585] [pool-1-thread-1] Initializing /data/converted/nicolas/image.tif: [testng] [2024-12-27 05:41:34,780] [pool-1-thread-1] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-12-27 05:41:55,879] [pool-1-thread-11] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-27 05:42:34,463] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-27 05:42:54,844] [pool-1-thread-11] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-27 05:43:42,331] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-12-27 05:43:45,183] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-27 05:44:02,762] [pool-1-thread-7] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-12-27 05:44:53,390] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-27 05:45:44,348] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-12-27 05:46:45,901] [pool-1-thread-8] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-27 05:47:31,002] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-12-27 05:47:57,124] [pool-1-thread-4] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-27 05:47:59,717] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-27 05:48:08,242] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-27 05:49:01,004] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-12-27 05:54:45,159] [pool-1-thread-12] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-12-27 05:55:50,032] [pool-1-thread-11] Initializing /data/converted/michel/a.tif: [testng] [2024-12-27 05:56:16,411] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-12-27 05:56:26,857] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-12-27 05:56:41,050] [pool-1-thread-10] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-27 05:57:07,734] [pool-1-thread-1] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-12-27 05:57:15,855] [pool-1-thread-3] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2024-12-27 05:59:00,019] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-12-27 05:59:17,323] [pool-1-thread-7] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-12-27 05:59:28,384] [pool-1-thread-4] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-27 06:03:14,107] [pool-1-thread-7] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-27 06:03:59,463] [pool-1-thread-2] Initializing /data/othmar/mozaic.tif: [testng] [2024-12-27 06:05:08,856] [pool-1-thread-9] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-12-27 06:05:44,829] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-27 06:06:01,695] [pool-1-thread-1] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-27 06:06:20,210] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-27 06:06:38,337] [pool-1-thread-11] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 06:15:22,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:15:22,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:15:22,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-27_06-15-22.log] [testng] 06:15:22,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b49d0e6 - End of configuration. [testng] 06:48:38,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:48:38,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:48:38,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-27_06-48-38.log] [testng] 06:48:38,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eca5702 - End of configuration. [testng] 06:51:53,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:51:53,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:51:53,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-27_06-51-53.log] [testng] 06:51:53,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef8cf89 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 139 minutes 52 seconds Finished: SUCCESS