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Started by upstream project "BIOFORMATS-test-repo" build number 35 originally caused by: Started by upstream project "Trigger" build number 39 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10473382103594906806.sh + '[' fei = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_4756_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 12:10:39,280 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 12:10:39,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 12:10:39,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:10:39,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:10:39,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:10:39,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:10:39,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:10:39,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:10:39,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:10:39,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:10:39,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:10:39,289 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:10:39,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:10:39,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:10:39,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:10:39,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:10:39,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:10:39,675 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:10:39,676 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:10:39,677 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:10:39,677 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 12:10:39,678 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 12:10:39,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 391 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-15 12:10:39,696] [main] java.version = 1.8.0_342 [testng] 12:10:39,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:10:39,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:39,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_12-10-39.log] [testng] 12:10:39,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-15 12:10:39,772] [main] testng.directory = /data [testng] [2024-04-15 12:10:39,773] [main] testng.configDirectory = /config [testng] [2024-04-15 12:10:39,785] [main] testng.multiplier = 1.0 [testng] [2024-04-15 12:10:39,786] [main] testng.in-memory = false [testng] [2024-04-15 12:10:39,786] [main] testng.allow-missing = false [testng] [2024-04-15 12:10:39,786] [main] user.language = fr [testng] [2024-04-15 12:10:39,786] [main] user.country = FR [testng] [2024-04-15 12:10:39,786] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-15 12:10:41,226] [main] ---------------------------------------- [testng] [2024-04-15 12:10:41,226] [main] Total files: 21 [testng] [2024-04-15 12:10:41,226] [main] Scan time: 1.44 s (68 ms/file) [testng] [2024-04-15 12:10:41,227] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-15 12:10:43,548] [pool-1-thread-1] Initializing /data/venu/VENU03.TIF: [testng] 12:10:43,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:10:43,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_12-10-43.log] [testng] 12:10:43,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3963a861 - End of configuration. [testng] [2024-04-15 12:10:43,604] [pool-1-thread-12] Initializing /data/venu/VENU_Five.TIF: [testng] 12:10:43,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:10:43,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-15_12-10-43.log] [testng] 12:10:43,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b06514f - End of configuration. [testng] [2024-04-15 12:10:43,631] [pool-1-thread-11] Initializing /data/venu/VENU_Eight.TIF: [testng] 12:10:43,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:10:43,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-15_12-10-43.log] [testng] 12:10:43,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d27e150 - End of configuration. [testng] [2024-04-15 12:10:43,660] [pool-1-thread-10] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] 12:10:43,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:10:43,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-15_12-10-43.log] [testng] 12:10:43,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47c7959c - End of configuration. [testng] [2024-04-15 12:10:43,722] [pool-1-thread-9] Initializing /data/venu/VENU02.IMG: [testng] 12:10:43,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:10:43,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-15_12-10-43.log] [testng] 12:10:43,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@301e1070 - End of configuration. [testng] [2024-04-15 12:10:43,746] [pool-1-thread-8] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 12:10:43,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:10:43,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_12-10-43.log] [testng] 12:10:43,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eafbe6f - End of configuration. [testng] [2024-04-15 12:10:43,786] [pool-1-thread-7] Initializing /data/venu/VENU_Six.TIF: [testng] 12:10:43,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:10:43,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_12-10-43.log] [testng] 12:10:43,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@433fe316 - End of configuration. [testng] [2024-04-15 12:10:43,833] [pool-1-thread-6] Initializing /data/venu/VENU_Seven.TIF: [testng] 12:10:43,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:10:43,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_12-10-43.log] [testng] 12:10:43,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62fd6f1 - End of configuration. [testng] [2024-04-15 12:10:43,878] [pool-1-thread-5] Initializing /data/steffen/Batman_008.tif: [testng] 12:10:43,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:10:43,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_12-10-43.log] [testng] 12:10:43,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e6b8c41 - End of configuration. [testng] [2024-04-15 12:10:43,926] [pool-1-thread-4] Initializing /data/venu/VENU_Four.TIF: [testng] 12:10:43,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:10:43,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_12-10-43.log] [testng] 12:10:43,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17cbe5a2 - End of configuration. [testng] [2024-04-15 12:10:43,960] [pool-1-thread-3] Initializing /data/venu/VENU01.TIF: [testng] 12:10:43,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:10:43,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:43,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_12-10-43.log] [testng] 12:10:43,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@435798bd - End of configuration. [testng] [2024-04-15 12:10:44,020] [pool-1-thread-2] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] 12:10:44,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:10:44,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:10:44,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_12-10-44.log] [testng] 12:10:44,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@110f737 - End of configuration. [testng] [2024-04-15 12:10:46,708] [pool-1-thread-6] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] [2024-04-15 12:10:46,747] [pool-1-thread-11] Initializing /data/venu/VENU.TIF: [testng] [2024-04-15 12:10:46,777] [pool-1-thread-9] Initializing /data/venu/VENU02.TIF: [testng] [2024-04-15 12:10:46,898] [pool-1-thread-8] Initializing /data/venu/VENU01.IMG: [testng] [2024-04-15 12:10:46,917] [pool-1-thread-1] Initializing /data/venu/VENU03.IMG: [testng] [2024-04-15 12:10:46,938] [pool-1-thread-3] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 15 seconds Finished: SUCCESS