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Started by upstream project "BIOFORMATS-test-repo" build number 301 originally caused by: Started by upstream project "Trigger" build number 323 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2749941956293109320.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47605_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:16:00,650 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:16:00,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 01:16:00,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:16:00,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:16:00,653 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:16:00,654 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:16:00,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:16:00,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:16:00,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:16:00,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:16:00,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:16:00,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:16:00,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:16:00,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:16:00,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:16:00,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:16:00,855 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:16:00,855 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:16:00,855 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:16:00,855 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:16:00,855 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 01:16:00,856 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 01:16:00,856 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-28 01:16:00,865] [main] java.version = 11.0.16 [testng] 01:16:00,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:16:00,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:00,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-28_01-16-00.log] [testng] 01:16:00,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-28 01:16:00,913] [main] testng.directory = /data [testng] [2024-12-28 01:16:00,913] [main] testng.configDirectory = /config [testng] [2024-12-28 01:16:00,923] [main] testng.multiplier = 1.0 [testng] [2024-12-28 01:16:00,924] [main] testng.in-memory = false [testng] [2024-12-28 01:16:00,924] [main] testng.allow-missing = false [testng] [2024-12-28 01:16:00,924] [main] user.language = en [testng] [2024-12-28 01:16:00,924] [main] user.country = ${user.country} [testng] [2024-12-28 01:16:00,924] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-28 01:16:42,883] [main] ---------------------------------------- [testng] [2024-12-28 01:16:42,883] [main] Total files: 259 [testng] [2024-12-28 01:16:42,883] [main] Scan time: 41.959 s (162 ms/file) [testng] [2024-12-28 01:16:42,883] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-28 01:37:19,333] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] 01:37:19,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:37:19,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:19,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-28_01-37-19.log] [testng] 01:37:19,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66671431 - End of configuration. [testng] [2024-12-28 01:37:20,942] [pool-1-thread-12] Initializing /data/glen/singleseqline.oif: [testng] 01:37:20,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:37:20,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:20,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-28_01-37-20.log] [testng] 01:37:20,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72600c64 - End of configuration. [testng] [2024-12-28 01:37:24,491] [pool-1-thread-11] Initializing /data/molly/11OCT5.OIF: [testng] 01:37:24,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:37:24,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:24,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-28_01-37-24.log] [testng] 01:37:24,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9feb054 - End of configuration. [testng] [2024-12-28 01:37:58,356] [pool-1-thread-10] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 01:37:58,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:37:58,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:37:58,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-28_01-37-58.log] [testng] 01:37:58,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bbacefa - End of configuration. [testng] [2024-12-28 01:38:03,798] [pool-1-thread-9] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] 01:38:03,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:38:03,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:03,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-28_01-38-03.log] [testng] 01:38:03,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3531bf3b - End of configuration. [testng] [2024-12-28 01:38:04,122] [pool-1-thread-8] Initializing /data/johannes/step2.bmp: [testng] 01:38:04,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:38:04,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:04,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-28_01-38-04.log] [testng] 01:38:04,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46a84be4 - End of configuration. [testng] [2024-12-28 01:38:04,486] [pool-1-thread-7] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 01:38:04,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:38:04,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:04,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-28_01-38-04.log] [testng] 01:38:04,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce46439 - End of configuration. [testng] [2024-12-28 01:38:09,639] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] 01:38:09,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:38:09,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:09,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-28_01-38-09.log] [testng] 01:38:09,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52e64df6 - End of configuration. [testng] [2024-12-28 01:38:14,428] [pool-1-thread-5] Initializing /data/marc/V0606J.oib: [testng] 01:38:14,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:38:14,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:14,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-28_01-38-14.log] [testng] 01:38:14,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dccd2ce - End of configuration. [testng] [2024-12-28 01:38:18,385] [pool-1-thread-4] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] 01:38:18,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:38:18,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:18,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-28_01-38-18.log] [testng] 01:38:18,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4add2976 - End of configuration. [testng] [2024-12-28 01:38:21,600] [pool-1-thread-3] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] 01:38:21,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:38:21,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:21,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-28_01-38-21.log] [testng] 01:38:21,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0de879 - End of configuration. [testng] [2024-12-28 01:38:27,990] [pool-1-thread-2] Initializing /data/brian/FLIP.oib: [testng] 01:38:27,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:38:27,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:27,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-28_01-38-27.log] [testng] 01:38:27,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53064653 - End of configuration. [testng] [2024-12-28 01:38:36,266] [pool-1-thread-9] Initializing /data/glen/notsaturated.oib: [testng] [2024-12-28 01:38:38,889] [pool-1-thread-8] Initializing /data/michael/CELL3.oib: [testng] [2024-12-28 01:38:46,719] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-12-28 01:38:48,657] [pool-1-thread-1] Initializing /data/glen/Null file/test change.oif: [testng] [2024-12-28 01:38:51,004] [pool-1-thread-2] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-12-28 01:38:59,201] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-12-28 01:39:05,546] [pool-1-thread-9] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-12-28 01:39:07,056] [pool-1-thread-8] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-12-28 01:39:08,297] [pool-1-thread-5] Initializing /data/christian/20min.oif: [testng] [2024-12-28 01:39:09,570] [pool-1-thread-4] Initializing /data/simon/used_to_work.oib: [testng] [2024-12-28 01:39:16,687] [pool-1-thread-6] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-12-28 01:39:19,190] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-12-28 01:39:22,340] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-12-28 01:39:23,706] [pool-1-thread-3] Initializing /data/monica/Image0056.oif: [testng] [2024-12-28 01:39:27,146] [pool-1-thread-8] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-12-28 01:39:35,991] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-12-28 01:39:39,879] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-12-28 01:39:48,722] [pool-1-thread-9] Initializing /data/johannes/step1.bmp: [testng] [2024-12-28 01:39:49,576] [pool-1-thread-7] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-12-28 01:39:53,635] [pool-1-thread-8] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-12-28 01:39:58,261] [pool-1-thread-9] Initializing /data/molly/11OCT4.OIF: [testng] [2024-12-28 01:40:33,214] [pool-1-thread-4] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-12-28 01:40:34,657] [pool-1-thread-6] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-12-28 01:40:41,628] [pool-1-thread-7] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-12-28 01:40:45,102] [pool-1-thread-8] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-12-28 01:40:58,782] [pool-1-thread-12] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-12-28 01:41:06,249] [pool-1-thread-4] Initializing /data/marc/V0606L.oib: [testng] [2024-12-28 01:41:09,566] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] [2024-12-28 01:42:14,363] [pool-1-thread-7] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-12-28 01:42:19,558] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-12-28 01:42:26,499] [pool-1-thread-12] Initializing /data/molly/11OCT10.OIF: [testng] [2024-12-28 01:43:18,266] [pool-1-thread-3] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-12-28 01:43:20,913] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-12-28 01:43:29,555] [pool-1-thread-1] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-12-28 01:43:46,678] [pool-1-thread-6] Initializing /data/glen/seqlinestack.oib: [testng] [2024-12-28 01:43:48,474] [pool-1-thread-4] Initializing /data/glen/singleseqline.oib: [testng] [2024-12-28 01:43:51,796] [pool-1-thread-3] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-12-28 01:43:56,720] [pool-1-thread-7] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-12-28 01:44:02,725] [pool-1-thread-4] Initializing /data/glen/singleseqframe.oib: [testng] [2024-12-28 01:44:04,499] [pool-1-thread-6] Initializing /data/glen/singlesimul.oib: [testng] [2024-12-28 01:44:07,780] [pool-1-thread-3] Initializing /data/kay/IM2pg.oib: [testng] [2024-12-28 01:44:14,513] [pool-1-thread-7] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-12-28 01:44:17,278] [pool-1-thread-4] Initializing /data/aryeh/1h.oib: [testng] [2024-12-28 01:44:20,687] [pool-1-thread-6] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-12-28 01:44:25,534] [pool-1-thread-3] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-12-28 01:44:29,999] [pool-1-thread-7] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-12-28 01:44:36,579] [pool-1-thread-6] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-12-28 01:44:37,772] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-12-28 01:44:44,399] [pool-1-thread-3] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-12-28 01:44:47,444] [pool-1-thread-6] Initializing /data/johannes/step5b.bmp: [testng] [2024-12-28 01:44:50,385] [pool-1-thread-4] Initializing /data/johannes/step3.bmp: [testng] [2024-12-28 01:44:52,371] [pool-1-thread-6] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-12-28 01:44:56,749] [pool-1-thread-4] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-12-28 01:45:00,724] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-12-28 01:45:14,409] [pool-1-thread-6] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-12-28 01:45:20,478] [pool-1-thread-4] Initializing /data/glen/singlesimul.oif: [testng] [2024-12-28 01:47:14,695] [pool-1-thread-4] Initializing /data/glen/4205basal106072.oif: [testng] [2024-12-28 01:51:10,856] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-12-28 01:51:20,935] [pool-1-thread-7] Initializing /data/molly/11OCT3.OIF: [testng] [2024-12-28 01:53:58,608] [pool-1-thread-6] Initializing /data/molly/11OCT7.OIF: [testng] [2024-12-28 02:02:09,971] [pool-1-thread-10] Initializing /data/aryeh/control_test.oib: [testng] [2024-12-28 02:02:44,514] [pool-1-thread-10] Initializing /data/molly/11OCT11.OIF: [testng] [2024-12-28 02:03:46,619] [pool-1-thread-2] Initializing /data/yoshihito/XY.oib: [testng] [2024-12-28 02:03:55,855] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-12-28 02:12:45,065] [pool-1-thread-3] Initializing /data/brian/lambda02nm.oib: [testng] [2024-12-28 02:12:57,126] [pool-1-thread-3] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-12-28 02:13:10,327] [pool-1-thread-3] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-12-28 02:21:56,757] [pool-1-thread-11] Initializing /data/johannes/step4.bmp: [testng] [2024-12-28 02:22:02,857] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-12-28 02:22:15,735] [pool-1-thread-11] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-12-28 02:22:21,832] [pool-1-thread-9] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-12-28 02:22:39,160] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-12-28 02:22:53,191] [pool-1-thread-9] Initializing /data/brian/Kaede15.oib: [testng] [2024-12-28 02:23:08,349] [pool-1-thread-9] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-12-28 02:25:54,080] [pool-1-thread-9] Initializing /data/jae/Image0001.oib: [testng] [2024-12-28 02:26:08,029] [pool-1-thread-9] Initializing /data/chris/missegragation-15.oib: [testng] [2024-12-28 02:26:18,690] [pool-1-thread-9] Initializing /data/molly/11OCT6.OIF: [testng] [2024-12-28 02:28:25,357] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] [2024-12-28 02:32:06,513] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-12-28 02:32:17,648] [pool-1-thread-8] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-12-28 02:32:35,827] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-12-28 02:32:49,869] [pool-1-thread-8] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-12-28 02:33:02,064] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-12-28 02:33:14,738] [pool-1-thread-11] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-12-28 02:33:20,963] [pool-1-thread-8] Initializing /data/pedro/plv-test.oib: [testng] [2024-12-28 02:33:38,073] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-12-28 02:33:53,335] [pool-1-thread-8] Initializing /data/johannes/step4b.bmp: [testng] [2024-12-28 02:33:58,063] [pool-1-thread-8] Initializing /data/tom/RGB-1.avi: [testng] [2024-12-28 02:34:06,147] [pool-1-thread-8] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-12-28 02:37:09,272] [pool-1-thread-3] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-12-28 02:37:22,904] [pool-1-thread-3] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-12-28 02:37:27,838] [pool-1-thread-6] Initializing /data/david/Image0016.oib: [testng] [2024-12-28 02:37:41,736] [pool-1-thread-3] Initializing /data/tom/zseries-test.oib: [testng] [2024-12-28 02:37:46,754] [pool-1-thread-6] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-12-28 02:39:58,783] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-12-28 02:40:08,373] [pool-1-thread-2] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-12-28 02:40:16,189] [pool-1-thread-3] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-12-28 02:40:24,123] [pool-1-thread-2] Initializing /data/glen/notsaturated.oif: [testng] [2024-12-28 02:41:05,128] [pool-1-thread-11] Initializing /data/yasunori/series_1.oib: [testng] [2024-12-28 02:41:19,440] [pool-1-thread-11] Initializing /data/yoshihito/XY.oif: [testng] [2024-12-28 02:41:32,238] [pool-1-thread-1] Initializing /data/molly/11OCT8.OIF: [testng] [2024-12-28 02:42:34,091] [pool-1-thread-3] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-12-28 02:42:49,359] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oif: [testng] [2024-12-28 02:42:57,460] [pool-1-thread-11] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-12-28 02:43:08,441] [pool-1-thread-11] Initializing /data/sten/01.oib: [testng] [2024-12-28 02:43:20,785] [pool-1-thread-11] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-12-28 02:44:48,918] [pool-1-thread-3] Initializing /data/simon/never_worked.oib: [testng] [2024-12-28 02:44:59,828] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-12-28 02:45:16,210] [pool-1-thread-3] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-12-28 02:45:18,691] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-12-28 02:48:23,521] [pool-1-thread-3] Initializing /data/molly/11OCT9.OIF: [testng] [2024-12-28 02:51:17,535] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-12-28 02:51:20,031] [pool-1-thread-12] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-12-28 02:51:24,407] [pool-1-thread-11] Initializing /data/allan/62909#1.oib: [testng] [2024-12-28 02:51:31,956] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-12-28 02:52:14,520] [pool-1-thread-12] Initializing /data/glen/Image0002.oif: [testng] [2024-12-28 02:56:19,613] [pool-1-thread-10] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-12-28 02:56:29,478] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] 02:56:39,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:56:39,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:39,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-28_02-56-39.log] [testng] 02:56:39,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f167b9 - End of configuration. [testng] [2024-12-28 02:56:41,213] [pool-1-thread-10] Initializing /data/glen/seqlinestack.oif: [testng] [2024-12-28 03:03:16,437] [pool-1-thread-2] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-12-28 03:03:34,765] [pool-1-thread-2] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-12-28 03:05:54,747] [pool-1-thread-2] Initializing /data/glen/simulstack.oib: [testng] [2024-12-28 03:06:08,299] [pool-1-thread-2] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-12-28 03:06:21,420] [pool-1-thread-2] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-12-28 03:06:34,422] [pool-1-thread-2] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-12-28 03:06:46,853] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-12-28 03:07:01,030] [pool-1-thread-2] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-12-28 03:07:24,919] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-12-28 03:08:01,940] [pool-1-thread-5] Initializing /data/karl/Image0009.oib: [testng] [2024-12-28 03:08:10,544] [pool-1-thread-5] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-12-28 03:08:20,108] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-12-28 03:08:32,210] [pool-1-thread-5] Initializing /data/glen/111407.oif: [testng] 04:43:45,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:43:45,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:43:45,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-28_04-43-45.log] [testng] 04:43:45,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f02a077 - End of configuration. [testng] 05:04:29,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:04:29,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:04:29,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-28_05-04-29.log] [testng] 05:04:29,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9976a0 - End of configuration. [testng] 05:54:40,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:54:40,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:54:40,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-28_05-54-40.log] [testng] 05:54:40,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ca7d4bd - End of configuration. [testng] 06:11:44,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:11:44,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:11:44,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-28_06-11-44.log] [testng] 06:11:44,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6801b4a4 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 295 minutes 47 seconds Finished: SUCCESS