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Started by upstream project "BIOFORMATS-test-repo" build number 303 originally caused by: Started by upstream project "Trigger" build number 325 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins10017891830427956483.sh + '[' pict = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_47944_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:03:49,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:03:49,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:03:49,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:03:49,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:03:49,723 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:03:49,723 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:03:49,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:03:49,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:03:49,724 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:03:49,724 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:03:49,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:03:49,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:03:49,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:03:49,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:03:49,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:03:49,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:03:49,992 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:03:49,992 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:03:49,992 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:03:49,992 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:03:49,992 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:03:49,993 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:03:49,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 269 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-30 01:03:50,003] [main] java.version = 1.8.0_342 [testng] 01:03:50,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:03:50,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:50,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-30_01-03-50.log] [testng] 01:03:50,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-30 01:03:50,055] [main] testng.directory = /data [testng] [2024-12-30 01:03:50,055] [main] testng.configDirectory = /config [testng] [2024-12-30 01:03:50,067] [main] testng.multiplier = 1.0 [testng] [2024-12-30 01:03:50,068] [main] testng.in-memory = false [testng] [2024-12-30 01:03:50,068] [main] testng.allow-missing = false [testng] [2024-12-30 01:03:50,068] [main] user.language = fr [testng] [2024-12-30 01:03:50,068] [main] user.country = FR [testng] [2024-12-30 01:03:50,068] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-30 01:03:50,735] [main] ---------------------------------------- [testng] [2024-12-30 01:03:50,735] [main] Total files: 25 [testng] [2024-12-30 01:03:50,735] [main] Scan time: 0.667 s (26 ms/file) [testng] [2024-12-30 01:03:50,735] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-30 01:03:55,464] [pool-1-thread-1] Initializing /data/jqd/mireSixteen.pict: [testng] 01:03:55,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:03:55,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:55,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-30_01-03-55.log] [testng] 01:03:55,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ad1d7e - End of configuration. [testng] [2024-12-30 01:03:55,559] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:03:55,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:03:55,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:55,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-30_01-03-55.log] [testng] 01:03:55,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462bf57d - End of configuration. [testng] [2024-12-30 01:03:55,667] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:03:55,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:03:55,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:55,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-30_01-03-55.log] [testng] 01:03:55,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2826bee5 - End of configuration. [testng] [2024-12-30 01:03:55,760] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 01:03:55,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:03:55,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:55,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-30_01-03-55.log] [testng] 01:03:55,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67687d2e - End of configuration. [testng] [2024-12-30 01:03:55,855] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 01:03:55,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:03:55,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:55,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-30_01-03-55.log] [testng] 01:03:55,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@446cd35b - End of configuration. [testng] [2024-12-30 01:03:55,958] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:03:55,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:03:55,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:55,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-30_01-03-55.log] [testng] 01:03:55,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@743966a4 - End of configuration. [testng] [2024-12-30 01:03:56,057] [pool-1-thread-7] Initializing /data/misc/planet.png: [testng] 01:03:56,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:03:56,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:56,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-30_01-03-56.log] [testng] 01:03:56,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@adf987f - End of configuration. [testng] [2024-12-30 01:03:56,070] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict: [testng] 01:03:56,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:03:56,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:56,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-30_01-03-56.log] [testng] 01:03:56,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eaacac2 - End of configuration. [testng] [2024-12-30 01:03:56,170] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 01:03:56,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:03:56,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:56,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-30_01-03-56.log] [testng] 01:03:56,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a1bfe1c - End of configuration. [testng] [2024-12-30 01:03:56,266] [pool-1-thread-4] Initializing /data/brian/images/RED.PCT: [testng] 01:03:56,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:03:56,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:56,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-30_01-03-56.log] [testng] 01:03:56,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac286f6 - End of configuration. [testng] [2024-12-30 01:03:56,403] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 01:03:56,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:03:56,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:56,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-30_01-03-56.log] [testng] 01:03:56,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51dcaa25 - End of configuration. [testng] [2024-12-30 01:03:56,702] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:03:56,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:03:56,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:03:56,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-30_01-03-56.log] [testng] 01:03:56,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@555592c8 - End of configuration. [testng] [2024-12-30 01:03:59,202] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-12-30 01:04:00,313] [pool-1-thread-5] Initializing /data/brian/images/BLK.PCT: [testng] [2024-12-30 01:04:00,476] [pool-1-thread-6] Initializing /data/misc/planet2.pict: [testng] [2024-12-30 01:04:00,611] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] [2024-12-30 01:04:00,745] [pool-1-thread-8] Initializing /data/misc/swlogo.pict: [testng] [2024-12-30 01:04:00,861] [pool-1-thread-1] Initializing /data/jqd/mire32.pict: [testng] [2024-12-30 01:04:00,962] [pool-1-thread-2] Initializing /data/brian/images/VENUS.pct: [testng] [2024-12-30 01:04:01,122] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-12-30 01:04:01,359] [pool-1-thread-9] Initializing /data/brian/images/YEL.PCT: [testng] [2024-12-30 01:04:01,457] [pool-1-thread-10] Initializing /data/misc/planet.pict: [testng] [2024-12-30 01:04:01,635] [pool-1-thread-12] Initializing /data/brian/images/BLU.PCT: [testng] [2024-12-30 01:04:01,753] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-12-30 01:04:04,531] [pool-1-thread-7] Initializing /data/brian/images/TRU256.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS