Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 303
originally caused by:
 Started by upstream project "Trigger" build number 325
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins5218399771038860199.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_48051_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 06:25:13,608 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 06:25:13,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 06:25:13,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:25:13,611 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:25:13,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 06:25:13,612 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 06:25:13,612 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 06:25:13,612 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:25:13,613 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:25:13,613 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 06:25:13,613 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 06:25:13,613 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 06:25:13,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 06:25:13,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 06:25:13,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 06:25:13,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 06:25:13,906 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 06:25:13,906 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 06:25:13,906 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 06:25:13,906 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 06:25:13,907 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 06:25:13,907 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 06:25:13,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 296 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-30 06:25:13,919] [main] java.version = 1.8.0_342
   [testng] 06:25:13,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 06:25:13,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:13,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-30_06-25-13.log]
   [testng] 06:25:13,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-12-30 06:25:13,977] [main] testng.directory = /data
   [testng] [2024-12-30 06:25:13,977] [main] testng.configDirectory = /config
   [testng] [2024-12-30 06:25:13,991] [main] testng.multiplier = 1.0
   [testng] [2024-12-30 06:25:13,991] [main] testng.in-memory = false
   [testng] [2024-12-30 06:25:13,992] [main] testng.allow-missing = false
   [testng] [2024-12-30 06:25:13,992] [main] user.language = fr
   [testng] [2024-12-30 06:25:13,992] [main] user.country = FR
   [testng] [2024-12-30 06:25:13,992] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-12-30 06:25:18,861] [main] ----------------------------------------
   [testng] [2024-12-30 06:25:18,861] [main] Total files: 22
   [testng] [2024-12-30 06:25:18,861] [main] Scan time: 4.869 s (221 ms/file)
   [testng] [2024-12-30 06:25:18,861] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 21 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-30 06:25:40,107] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: 
   [testng] 06:25:40,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 06:25:40,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:40,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-30_06-25-40.log]
   [testng] 06:25:40,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60013474 - End of configuration.
   [testng] [2024-12-30 06:25:40,634] [pool-1-thread-12] Initializing /data/converted/mitosis-test.tif: 
   [testng] 06:25:40,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 06:25:40,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:40,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-30_06-25-40.log]
   [testng] 06:25:40,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8af7d2 - End of configuration.
   [testng] [2024-12-30 06:25:41,938] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.seq: 
   [testng] 06:25:41,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 06:25:41,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:41,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-30_06-25-41.log]
   [testng] 06:25:41,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50473109 - End of configuration.
   [testng] [2024-12-30 06:25:42,524] [pool-1-thread-10] Initializing /data/samples/TISSUE.TIF: 
   [testng] 06:25:42,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 06:25:42,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:42,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-30_06-25-42.log]
   [testng] 06:25:42,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a9b3b7e - End of configuration.
   [testng] [2024-12-30 06:25:43,736] [pool-1-thread-9] Initializing /data/samples/HEART.SEQ: 
   [testng] 06:25:43,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 06:25:43,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:43,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-30_06-25-43.log]
   [testng] 06:25:43,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10f2d5e6 - End of configuration.
   [testng] [2024-12-30 06:25:44,237] [pool-1-thread-8] Initializing /data/converted/mitosis-test.seq: 
   [testng] 06:25:44,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 06:25:44,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:44,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-30_06-25-44.log]
   [testng] 06:25:44,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ddf3ffe - End of configuration.
   [testng] [2024-12-30 06:25:44,816] [pool-1-thread-7] Initializing /data/converted/dub01.seq: 
   [testng] 06:25:44,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 06:25:44,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:44,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-30_06-25-44.log]
   [testng] 06:25:44,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44a72ce4 - End of configuration.
   [testng] [2024-12-30 06:25:45,347] [pool-1-thread-6] Initializing /data/converted/clown.seq: 
   [testng] 06:25:45,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 06:25:45,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:45,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-30_06-25-45.log]
   [testng] 06:25:45,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57519072 - End of configuration.
   [testng] [2024-12-30 06:25:45,842] [pool-1-thread-5] Initializing /data/converted/mitosis-test.ipw: 
   [testng] 06:25:45,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 06:25:45,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:45,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-30_06-25-45.log]
   [testng] 06:25:45,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cc46cce - End of configuration.
   [testng] [2024-12-30 06:25:46,338] [pool-1-thread-4] Initializing /data/converted/dub01.pic: 
   [testng] 06:25:46,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 06:25:46,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:46,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-30_06-25-46.log]
   [testng] 06:25:46,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69e82094 - End of configuration.
   [testng] [2024-12-30 06:25:46,864] [pool-1-thread-3] Initializing /data/converted/dub01.ipw: 
   [testng] 06:25:46,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 06:25:46,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:46,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-30_06-25-46.log]
   [testng] 06:25:46,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57c446cf - End of configuration.
   [testng] [2024-12-30 06:25:47,466] [pool-1-thread-2] Initializing /data/converted/clown8c.ipw: 
   [testng] 06:25:47,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 06:25:47,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:25:47,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-30_06-25-47.log]
   [testng] 06:25:47,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e9a859 - End of configuration.
   [testng] [2024-12-30 06:25:54,148] [pool-1-thread-2] Initializing /data/samples/PROBE.TIF: 
   [testng] [2024-12-30 06:25:54,679] [pool-1-thread-6] Initializing /data/converted/clown8c.tif: 
   [testng] [2024-12-30 06:25:55,995] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.ipw: 
   [testng] [2024-12-30 06:25:56,460] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.tiff: 
   [testng] [2024-12-30 06:25:57,781] [pool-1-thread-3] Initializing /data/xiuwen/head2.seq: 
   [testng] [2024-12-30 06:25:58,325] [pool-1-thread-8] Initializing /data/converted/clown.ipw: 
   [testng] [2024-12-30 06:25:58,865] [pool-1-thread-9] Initializing /data/alex/AFAset0003.ips: 
   [testng] [2024-12-30 06:25:59,401] [pool-1-thread-7] Initializing /data/samples/FLDUAL.TIF: 
   [testng] [2024-12-30 06:26:00,644] [pool-1-thread-11] Initializing /data/converted/clown.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1113, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 3 minutes 35 seconds
Finished: SUCCESS