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Started by upstream project "BIOFORMATS-test-repo" build number 35 originally caused by: Started by upstream project "Trigger" build number 39 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3052893579754768909.sh + '[' afi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_4809_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 12:37:55,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 12:37:55,811 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 12:37:55,811 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:37:55,813 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:37:55,813 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:37:55,813 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:37:55,814 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:37:55,814 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:37:55,814 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:37:55,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:37:55,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:37:55,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:37:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:37:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:37:56,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:37:56,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:37:56,206 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:37:56,206 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:37:56,207 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:37:56,207 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:37:56,207 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 12:37:56,208 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 12:37:56,208 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 394 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-15 12:37:56,218] [main] java.version = 1.8.0_342 [testng] 12:37:56,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:37:56,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:37:56,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_12-37-56.log] [testng] 12:37:56,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-15 12:37:56,291] [main] testng.directory = /data [testng] [2024-04-15 12:37:56,291] [main] testng.configDirectory = /config [testng] [2024-04-15 12:37:56,306] [main] testng.multiplier = 1.0 [testng] [2024-04-15 12:37:56,306] [main] testng.in-memory = false [testng] [2024-04-15 12:37:56,307] [main] testng.allow-missing = false [testng] [2024-04-15 12:37:56,307] [main] user.language = fr [testng] [2024-04-15 12:37:56,307] [main] user.country = FR [testng] [2024-04-15 12:37:56,307] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-15 12:37:57,391] [main] ---------------------------------------- [testng] [2024-04-15 12:37:57,391] [main] Total files: 16 [testng] [2024-04-15 12:37:57,392] [main] Scan time: 1.084 s (67 ms/file) [testng] [2024-04-15 12:37:57,392] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-15 12:38:09,687] [pool-1-thread-1] Initializing /data/samples/5400.afi: [testng] 12:38:09,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:38:09,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:09,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_12-38-09.log] [testng] 12:38:09,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@794bf655 - End of configuration. [testng] [2024-04-15 12:38:09,872] [pool-1-thread-12] Initializing /data/samples/5351.afi: [testng] 12:38:09,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:38:09,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:09,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-15_12-38-09.log] [testng] 12:38:09,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@131611bc - End of configuration. [testng] [2024-04-15 12:38:10,076] [pool-1-thread-11] Initializing /data/samples/5306.afi: [testng] 12:38:10,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:38:10,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:10,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-15_12-38-10.log] [testng] 12:38:10,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4101a52d - End of configuration. [testng] [2024-04-15 12:38:10,147] [pool-1-thread-10] Initializing /data/samples/5383.afi: [testng] 12:38:10,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:38:10,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:10,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-15_12-38-10.log] [testng] 12:38:10,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fe80a71 - End of configuration. [testng] [2024-04-15 12:38:10,215] [pool-1-thread-9] Initializing /data/samples/5365.afi: [testng] 12:38:10,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:38:10,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:10,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-15_12-38-10.log] [testng] 12:38:10,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ea4082c - End of configuration. [testng] [2024-04-15 12:38:10,310] [pool-1-thread-8] Initializing /data/samples/5440.afi: [testng] 12:38:10,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:38:10,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:10,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_12-38-10.log] [testng] 12:38:10,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ada7c71 - End of configuration. [testng] [2024-04-15 12:38:10,548] [pool-1-thread-7] Initializing /data/samples/5446.afi: [testng] 12:38:10,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:38:10,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:10,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_12-38-10.log] [testng] 12:38:10,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189819b8 - End of configuration. [testng] [2024-04-15 12:38:10,637] [pool-1-thread-6] Initializing /data/samples/5339.afi: [testng] 12:38:10,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:38:10,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:10,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_12-38-10.log] [testng] 12:38:10,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d7e4d8e - End of configuration. [testng] [2024-04-15 12:38:10,690] [pool-1-thread-5] Initializing /data/samples/5387.afi: [testng] 12:38:10,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:38:10,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:10,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_12-38-10.log] [testng] 12:38:10,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@478c4d90 - End of configuration. [testng] [2024-04-15 12:38:10,790] [pool-1-thread-4] Initializing /data/samples/5407.afi: [testng] 12:38:10,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:38:10,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:10,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_12-38-10.log] [testng] 12:38:10,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4761d6e8 - End of configuration. [testng] [2024-04-15 12:38:10,859] [pool-1-thread-3] Initializing /data/samples/5347.afi: [testng] 12:38:10,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:38:10,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:10,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_12-38-10.log] [testng] 12:38:10,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eeeb843 - End of configuration. [testng] [2024-04-15 12:38:11,043] [pool-1-thread-2] Initializing /data/samples/5358.afi: [testng] 12:38:11,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:38:11,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:38:11,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_12-38-11.log] [testng] 12:38:11,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26141900 - End of configuration. [testng] [2024-04-15 12:38:54,325] [pool-1-thread-1] Initializing /data/samples/5414.afi: [testng] [2024-04-15 12:38:55,774] [pool-1-thread-8] Initializing /data/samples/5343.afi: [testng] [2024-04-15 12:38:56,573] [pool-1-thread-3] Initializing /data/samples/5371.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 56 seconds Finished: SUCCESS