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Started by upstream project "BIOFORMATS-test-repo" build number 35 originally caused by: Started by upstream project "Trigger" build number 39 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins7283394124338865298.sh + '[' avi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_4814_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 12:49:23,873 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 12:49:23,875 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 12:49:23,875 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:49:23,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:49:23,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:49:23,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:49:23,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:49:23,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:49:23,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:49:23,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:49:23,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:49:23,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:49:24,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:49:24,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:49:24,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:49:24,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:49:24,335 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:49:24,335 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:49:24,335 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:49:24,336 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:49:24,336 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 12:49:24,337 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 12:49:24,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 458 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-15 12:49:24,348] [main] java.version = 1.8.0_342 [testng] 12:49:24,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:49:24,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:49:24,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_12-49-24.log] [testng] 12:49:24,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-15 12:49:24,420] [main] testng.directory = /data [testng] [2024-04-15 12:49:24,421] [main] testng.configDirectory = /config [testng] [2024-04-15 12:49:24,441] [main] testng.multiplier = 1.0 [testng] [2024-04-15 12:49:24,442] [main] testng.in-memory = false [testng] [2024-04-15 12:49:24,442] [main] testng.allow-missing = false [testng] [2024-04-15 12:49:24,442] [main] user.language = fr [testng] [2024-04-15 12:49:24,442] [main] user.country = FR [testng] [2024-04-15 12:49:24,442] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-15 12:49:25,650] [main] ---------------------------------------- [testng] [2024-04-15 12:49:25,650] [main] Total files: 40 [testng] [2024-04-15 12:49:25,650] [main] Scan time: 1.208 s (30 ms/file) [testng] [2024-04-15 12:49:25,650] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-15 12:53:53,750] [pool-1-thread-1] Initializing /data/simon/24_bit_problem.avi: [testng] 12:53:53,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:53:53,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:53,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_12-53-53.log] [testng] 12:53:53,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fc8f8 - End of configuration. [testng] [2024-04-15 12:53:53,796] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 12:53:53,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:53:53,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:53,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-15_12-53-53.log] [testng] 12:53:53,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30609a03 - End of configuration. [testng] [2024-04-15 12:53:53,821] [pool-1-thread-11] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 12:53:53,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:53:53,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:53,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-15_12-53-53.log] [testng] 12:53:53,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c66bfdf - End of configuration. [testng] [2024-04-15 12:53:53,851] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 12:53:53,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:53:53,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:53,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-15_12-53-53.log] [testng] 12:53:53,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27515586 - End of configuration. [testng] [2024-04-15 12:53:53,901] [pool-1-thread-9] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 12:53:53,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:53:53,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:53,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-15_12-53-53.log] [testng] 12:53:53,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e20348e - End of configuration. [testng] [2024-04-15 12:53:53,912] [pool-1-thread-8] Initializing /data/kurt/40x_6um_2.avi: [testng] 12:53:53,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:53:53,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:53,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_12-53-53.log] [testng] 12:53:53,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53e28a27 - End of configuration. [testng] [2024-04-15 12:53:53,968] [pool-1-thread-7] Initializing /data/william/worm.avi: [testng] 12:53:53,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:53:53,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:53,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_12-53-53.log] [testng] 12:53:53,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78489794 - End of configuration. [testng] [2024-04-15 12:53:53,979] [pool-1-thread-6] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 12:53:53,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:53:53,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:53,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_12-53-53.log] [testng] 12:53:53,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66aefbe3 - End of configuration. [testng] [2024-04-15 12:53:54,191] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] 12:53:54,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:53:54,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:54,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_12-53-54.log] [testng] 12:53:54,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16c3218f - End of configuration. [testng] [2024-04-15 12:53:54,210] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 12:53:54,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:53:54,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:54,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_12-53-54.log] [testng] 12:53:54,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719a6bc2 - End of configuration. [testng] [2024-04-15 12:53:54,236] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] 12:53:54,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:53:54,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:53:54,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_12-53-54.log] [testng] 12:53:54,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d6e8078 - End of configuration. [testng] [2024-04-15 12:54:03,226] [pool-1-thread-2] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 12:54:03,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:54:03,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:54:03,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_12-54-03.log] [testng] 12:54:03,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b57135f - End of configuration. [testng] [2024-04-15 12:54:05,752] [pool-1-thread-4] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-04-15 12:54:05,779] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-04-15 12:54:05,811] [pool-1-thread-7] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-04-15 12:54:05,835] [pool-1-thread-9] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-04-15 12:54:06,612] [pool-1-thread-10] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-04-15 12:54:06,659] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-04-15 12:54:06,688] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-04-15 12:54:06,708] [pool-1-thread-5] Initializing /data/kurt/40x_6um.avi: [testng] [2024-04-15 12:54:06,778] [pool-1-thread-11] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-04-15 12:54:06,830] [pool-1-thread-1] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-04-15 12:54:07,175] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-04-15 12:54:07,292] [pool-1-thread-8] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-04-15 12:54:07,313] [pool-1-thread-7] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-04-15 12:54:07,414] [pool-1-thread-12] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2024-04-15 12:54:07,768] [pool-1-thread-1] Initializing /data/chris/APZ04_009.avi: [testng] [2024-04-15 12:54:13,264] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2024-04-15 12:54:13,329] [pool-1-thread-6] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-04-15 12:54:13,385] [pool-1-thread-4] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-04-15 12:54:13,926] [pool-1-thread-11] Initializing /data/kurt/63x_6um.avi: [testng] [2024-04-15 12:54:14,080] [pool-1-thread-5] Initializing /data/ascb/TIRF.avi: [testng] [2024-04-15 12:54:14,408] [pool-1-thread-2] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-04-15 12:54:14,452] [pool-1-thread-10] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-04-15 12:54:14,881] [pool-1-thread-12] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-04-15 12:54:15,274] [pool-1-thread-6] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-04-15 12:54:15,379] [pool-1-thread-8] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-04-15 12:54:15,689] [pool-1-thread-8] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 4 seconds Finished: SUCCESS