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Started by upstream project "BIOFORMATS-test-repo" build number 304 originally caused by: Started by upstream project "Trigger" build number 326 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins14719956693836710945.sh + '[' psd = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48191_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 05:00:22,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:00:22,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 05:00:22,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:00:22,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:00:22,233 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:00:22,233 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:00:22,233 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:00:22,233 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:00:22,234 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:00:22,235 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:00:22,235 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:00:22,235 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:00:22,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:00:22,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:00:22,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:00:22,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:00:22,416 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:00:22,416 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:00:22,417 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:00:22,417 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:00:22,417 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 05:00:22,418 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 05:00:22,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-31 05:00:22,426] [main] java.version = 11.0.16 [testng] 05:00:22,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:00:22,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:22,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-31_05-00-22.log] [testng] 05:00:22,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-31 05:00:22,471] [main] testng.directory = /data [testng] [2024-12-31 05:00:22,472] [main] testng.configDirectory = /config [testng] [2024-12-31 05:00:22,481] [main] testng.multiplier = 1.0 [testng] [2024-12-31 05:00:22,482] [main] testng.in-memory = false [testng] [2024-12-31 05:00:22,482] [main] testng.allow-missing = false [testng] [2024-12-31 05:00:22,482] [main] user.language = en [testng] [2024-12-31 05:00:22,482] [main] user.country = ${user.country} [testng] [2024-12-31 05:00:22,482] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-31 05:00:23,964] [main] ---------------------------------------- [testng] [2024-12-31 05:00:23,964] [main] Total files: 18 [testng] [2024-12-31 05:00:23,964] [main] Scan time: 1.482 s (82 ms/file) [testng] [2024-12-31 05:00:23,964] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-31 05:00:33,037] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd: [testng] 05:00:33,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:00:33,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:33,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-31_05-00-33.log] [testng] 05:00:33,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@769c67c4 - End of configuration. [testng] [2024-12-31 05:00:33,611] [pool-1-thread-12] Initializing /data/misc/venus_composite.psd: [testng] 05:00:33,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:00:33,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:33,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-31_05-00-33.log] [testng] 05:00:33,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d2dcfbb - End of configuration. [testng] [2024-12-31 05:00:34,535] [pool-1-thread-11] Initializing /data/misc/vig_drawing_1.psd: [testng] 05:00:34,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:00:34,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:34,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-31_05-00-34.log] [testng] 05:00:34,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1582aaaf - End of configuration. [testng] [2024-12-31 05:00:34,949] [pool-1-thread-10] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 05:00:34,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:00:34,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:34,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-31_05-00-34.log] [testng] 05:00:34,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46cc16a - End of configuration. [testng] [2024-12-31 05:00:35,335] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 05:00:35,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:00:35,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:35,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-31_05-00-35.log] [testng] 05:00:35,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@409c235b - End of configuration. [testng] [2024-12-31 05:00:35,694] [pool-1-thread-8] Initializing /data/misc/glossy_orbs.psd: [testng] 05:00:35,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:00:35,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:35,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-31_05-00-35.log] [testng] 05:00:35,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@555daddb - End of configuration. [testng] [2024-12-31 05:00:36,124] [pool-1-thread-7] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 05:00:36,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:00:36,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:36,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-31_05-00-36.log] [testng] 05:00:36,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d52f93 - End of configuration. [testng] [2024-12-31 05:00:36,508] [pool-1-thread-6] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 05:00:36,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:00:36,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:36,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-31_05-00-36.log] [testng] 05:00:36,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188a9798 - End of configuration. [testng] [2024-12-31 05:00:36,867] [pool-1-thread-5] Initializing /data/ascb/423.psd: [testng] 05:00:36,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:00:36,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:36,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-31_05-00-36.log] [testng] 05:00:36,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15d2017 - End of configuration. [testng] [2024-12-31 05:00:37,255] [pool-1-thread-4] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 05:00:37,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:00:37,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:37,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-31_05-00-37.log] [testng] 05:00:37,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ba0c04e - End of configuration. [testng] [2024-12-31 05:00:37,682] [pool-1-thread-3] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 05:00:37,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:00:37,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:37,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-31_05-00-37.log] [testng] 05:00:37,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a24530 - End of configuration. [testng] [2024-12-31 05:00:38,046] [pool-1-thread-2] Initializing /data/simon/colour_separated_image.psd: [testng] 05:00:38,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:00:38,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:00:38,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-31_05-00-38.log] [testng] 05:00:38,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f2e700b - End of configuration. [testng] [2024-12-31 05:00:43,319] [pool-1-thread-8] Initializing /data/cris/house.tif: [testng] [2024-12-31 05:00:45,011] [pool-1-thread-4] Initializing /data/misc/smilie.psd: [testng] [2024-12-31 05:00:45,364] [pool-1-thread-2] Initializing /data/misc/venus_composite_8bit.psd: [testng] [2024-12-31 05:00:45,706] [pool-1-thread-11] Initializing /data/misc/glossy_buttons.psd: [testng] [2024-12-31 05:00:46,086] [pool-1-thread-10] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] [2024-12-31 05:00:46,481] [pool-1-thread-12] Initializing /data/ascb/607x.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 39 seconds Finished: SUCCESS