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Started by upstream project "BIOFORMATS-test-repo" build number 304 originally caused by: Started by upstream project "Trigger" build number 326 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins13738344832385375814.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48214_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:18:31,273 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:18:31,275 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 06:18:31,275 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:18:31,276 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:18:31,276 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:18:31,277 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:18:31,277 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:18:31,277 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:18:31,277 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:18:31,278 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:18:31,278 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:18:31,279 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:18:31,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:18:31,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:18:31,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:18:31,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:18:31,461 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:18:31,461 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:18:31,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:18:31,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:18:31,462 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 06:18:31,463 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 06:18:31,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-31 06:18:31,471] [main] java.version = 11.0.16 [testng] 06:18:31,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:18:31,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:18:31,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-31_06-18-31.log] [testng] 06:18:31,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-31 06:18:31,517] [main] testng.directory = /data [testng] [2024-12-31 06:18:31,517] [main] testng.configDirectory = /config [testng] [2024-12-31 06:18:31,526] [main] testng.multiplier = 1.0 [testng] [2024-12-31 06:18:31,527] [main] testng.in-memory = false [testng] [2024-12-31 06:18:31,527] [main] testng.allow-missing = false [testng] [2024-12-31 06:18:31,527] [main] user.language = en [testng] [2024-12-31 06:18:31,527] [main] user.country = ${user.country} [testng] [2024-12-31 06:18:31,527] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-31 06:19:05,541] [main] ---------------------------------------- [testng] [2024-12-31 06:19:05,541] [main] Total files: 31 [testng] [2024-12-31 06:19:05,541] [main] Scan time: 34.014 s (1097 ms/file) [testng] [2024-12-31 06:19:05,541] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-31 06:19:45,164] [pool-1-thread-1] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 06:19:45,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:19:45,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:45,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-31_06-19-45.log] [testng] 06:19:45,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@143d439d - End of configuration. [testng] [2024-12-31 06:19:46,041] [pool-1-thread-12] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 06:19:46,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:19:46,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:46,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-31_06-19-46.log] [testng] 06:19:46,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7703a9c - End of configuration. [testng] [2024-12-31 06:19:47,142] [pool-1-thread-11] Initializing /data/big-images/4kx4k.jpf: [testng] 06:19:47,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:19:47,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:47,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-31_06-19-47.log] [testng] 06:19:47,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d324a1 - End of configuration. [testng] [2024-12-31 06:19:48,597] [pool-1-thread-10] Initializing /data/aryeh/flour 12.jp2: [testng] 06:19:48,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:19:48,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:48,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-31_06-19-48.log] [testng] 06:19:48,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aaea375 - End of configuration. [testng] [2024-12-31 06:19:49,561] [pool-1-thread-9] Initializing /data/misc/clown-rgb.jpc: [testng] 06:19:49,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:19:49,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:49,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-31_06-19-49.log] [testng] 06:19:49,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79ad46dc - End of configuration. [testng] [2024-12-31 06:19:50,441] [pool-1-thread-8] Initializing /data/vikram/Captured 2.jp2: [testng] 06:19:50,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:19:50,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:50,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-31_06-19-50.log] [testng] 06:19:50,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd2c117 - End of configuration. [testng] [2024-12-31 06:19:51,389] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jp2: [testng] 06:19:51,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:19:51,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:51,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-31_06-19-51.log] [testng] 06:19:51,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@124a7ba3 - End of configuration. [testng] [2024-12-31 06:19:52,241] [pool-1-thread-6] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 06:19:52,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:19:52,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:52,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-31_06-19-52.log] [testng] 06:19:52,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ce20e54 - End of configuration. [testng] [2024-12-31 06:19:54,672] [pool-1-thread-5] Initializing /data/vikram/Captured 4.jp2: [testng] 06:19:54,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:19:54,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:54,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-31_06-19-54.log] [testng] 06:19:54,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@392b41a7 - End of configuration. [testng] [2024-12-31 06:19:55,752] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 06:19:55,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:19:55,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:55,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-31_06-19-55.log] [testng] 06:19:55,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d02d744 - End of configuration. [testng] [2024-12-31 06:19:56,807] [pool-1-thread-3] Initializing /data/david/cy5-tph.jp2: [testng] 06:19:56,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:19:56,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:56,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-31_06-19-56.log] [testng] 06:19:56,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e620f4 - End of configuration. [testng] [2024-12-31 06:19:58,019] [pool-1-thread-2] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] 06:19:58,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:19:58,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:58,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-31_06-19-58.log] [testng] 06:19:58,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250a4279 - End of configuration. [testng] [2024-12-31 06:20:08,140] [pool-1-thread-9] Initializing /data/kraig/head.jp2: [testng] [2024-12-31 06:20:09,419] [pool-1-thread-7] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-12-31 06:20:10,327] [pool-1-thread-8] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-12-31 06:20:11,335] [pool-1-thread-5] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-12-31 06:20:12,262] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-12-31 06:20:18,029] [pool-1-thread-1] Initializing /data/big-images/2kx2k.jpf: [testng] [2024-12-31 06:20:20,670] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] [2024-12-31 06:20:23,385] [pool-1-thread-8] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-12-31 06:20:24,571] [pool-1-thread-9] Initializing /data/david/000000_000001.jpx: [testng] [2024-12-31 06:20:25,799] [pool-1-thread-2] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-12-31 06:20:27,073] [pool-1-thread-4] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-12-31 06:20:29,868] [pool-1-thread-10] Initializing /data/vikram/Captured 3.jp2: [testng] [2024-12-31 06:20:33,929] [pool-1-thread-4] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-12-31 06:20:36,517] [pool-1-thread-8] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-12-31 06:20:39,487] [pool-1-thread-1] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-12-31 06:20:40,512] [pool-1-thread-9] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-12-31 06:20:41,465] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-12-31 06:20:44,129] [pool-1-thread-11] Initializing /data/david/multichannel-2d test.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 38 seconds Finished: SUCCESS