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Started by upstream project "BIOFORMATS-test-repo" build number 305 originally caused by: Started by upstream project "Trigger" build number 327 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16373530001755407150.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48225_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:34:04,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:34:04,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:34:04,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:34:04,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:34:04,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:34:04,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:34:04,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:34:04,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:34:04,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:34:04,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:34:04,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:34:04,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:34:05,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:34:05,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:34:05,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:34:05,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:34:05,153 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:34:05,153 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:34:05,153 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:34:05,154 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:34:05,154 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:34:05,155 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:34:05,155 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-01 00:34:05,164] [main] java.version = 17.0.2 [testng] 00:34:05,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:34:05,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:05,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-01_00-34-05.log] [testng] 00:34:05,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2025-01-01 00:34:05,215] [main] testng.directory = /data [testng] [2025-01-01 00:34:05,215] [main] testng.configDirectory = /config [testng] [2025-01-01 00:34:05,225] [main] testng.multiplier = 1.0 [testng] [2025-01-01 00:34:05,226] [main] testng.in-memory = false [testng] [2025-01-01 00:34:05,226] [main] testng.allow-missing = false [testng] [2025-01-01 00:34:05,226] [main] user.language = en [testng] [2025-01-01 00:34:05,226] [main] user.country = ${user.country} [testng] [2025-01-01 00:34:05,226] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-01 00:34:10,238] [main] ---------------------------------------- [testng] [2025-01-01 00:34:10,238] [main] Total files: 103 [testng] [2025-01-01 00:34:10,238] [main] Scan time: 5.012 s (48 ms/file) [testng] [2025-01-01 00:34:10,239] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-01 00:34:23,798] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] 00:34:23,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:34:23,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:23,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-01_00-34-23.log] [testng] 00:34:23,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6138b555 - End of configuration. [testng] [2025-01-01 00:34:23,860] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e5.tif: [testng] 00:34:23,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:34:23,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:23,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-01_00-34-23.log] [testng] 00:34:23,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c2923b - End of configuration. [testng] [2025-01-01 00:34:24,250] [pool-1-thread-11] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] 00:34:24,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:34:24,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:24,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-01_00-34-24.log] [testng] 00:34:24,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@514aa4ff - End of configuration. [testng] [2025-01-01 00:34:24,542] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] 00:34:24,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:34:24,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:24,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-01_00-34-24.log] [testng] 00:34:24,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20f03d7b - End of configuration. [testng] [2025-01-01 00:34:24,593] [pool-1-thread-9] Initializing /data/jay/ViewDMtest.dm3: [testng] 00:34:24,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:34:24,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:24,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-01_00-34-24.log] [testng] 00:34:24,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6aef36 - End of configuration. [testng] [2025-01-01 00:34:24,645] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] 00:34:24,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:34:24,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:24,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-01_00-34-24.log] [testng] 00:34:24,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@257d3f6c - End of configuration. [testng] [2025-01-01 00:34:24,983] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] 00:34:24,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:34:24,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:24,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-01_00-34-24.log] [testng] 00:34:24,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@368da3e1 - End of configuration. [testng] [2025-01-01 00:34:25,355] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] 00:34:25,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:34:25,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:25,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-01_00-34-25.log] [testng] 00:34:25,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4005db3c - End of configuration. [testng] [2025-01-01 00:34:25,422] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] 00:34:25,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:34:25,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:25,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-01_00-34-25.log] [testng] 00:34:25,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a270d4 - End of configuration. [testng] [2025-01-01 00:34:25,488] [pool-1-thread-4] Initializing /data/melissa/annotation-test.dm3: [testng] 00:34:25,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:34:25,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:25,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-01_00-34-25.log] [testng] 00:34:25,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65bd6663 - End of configuration. [testng] [2025-01-01 00:34:25,554] [pool-1-thread-3] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] 00:34:25,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:34:25,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:25,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-01_00-34-25.log] [testng] 00:34:25,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d8c766f - End of configuration. [testng] [2025-01-01 00:34:25,611] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] 00:34:25,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:34:25,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:25,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-01_00-34-25.log] [testng] 00:34:25,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39fc2b8f - End of configuration. [testng] [2025-01-01 00:34:28,219] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2025-01-01 00:34:28,267] [pool-1-thread-5] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2025-01-01 00:34:28,871] [pool-1-thread-10] Initializing /data/ofra/lowloss.dm3: [testng] [2025-01-01 00:34:29,087] [pool-1-thread-6] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2025-01-01 00:34:29,367] [pool-1-thread-11] Initializing /data/jay/camtest1.dm3: [testng] [2025-01-01 00:34:29,671] [pool-1-thread-5] Initializing /data/chip/Nanogold-1.dm3: [testng] [2025-01-01 00:34:29,855] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2025-01-01 00:34:30,138] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2025-01-01 00:34:30,398] [pool-1-thread-4] Initializing /data/jay/DMtest.dm3: [testng] [2025-01-01 00:34:30,564] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2025-01-01 00:34:30,681] [pool-1-thread-1] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2025-01-01 00:34:31,149] [pool-1-thread-10] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2025-01-01 00:34:31,854] [pool-1-thread-8] Initializing /data/jay/DMtest2.dm3: [testng] [2025-01-01 00:34:32,398] [pool-1-thread-12] Initializing /data/jay/recAmaghi.dm3: [testng] [2025-01-01 00:34:32,880] [pool-1-thread-7] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2025-01-01 00:34:33,180] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2025-01-01 00:34:33,409] [pool-1-thread-11] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2025-01-01 00:34:34,647] [pool-1-thread-4] Initializing /data/melissa/annotation-test.tif: [testng] [2025-01-01 00:34:35,076] [pool-1-thread-9] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2025-01-01 00:34:35,406] [pool-1-thread-10] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2025-01-01 00:34:35,813] [pool-1-thread-1] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2025-01-01 00:34:36,321] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2025-01-01 00:34:36,475] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2025-01-01 00:34:36,670] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2025-01-01 00:34:36,832] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2025-01-01 00:34:37,760] [pool-1-thread-12] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2025-01-01 00:34:37,973] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2025-01-01 00:34:38,202] [pool-1-thread-4] Initializing /data/jay/smallerfile.dm3: [testng] [2025-01-01 00:34:39,188] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2025-01-01 00:34:39,294] [pool-1-thread-5] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2025-01-01 00:34:39,592] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2025-01-01 00:34:40,087] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2025-01-01 00:34:40,535] [pool-1-thread-9] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2025-01-01 00:34:41,864] [pool-1-thread-10] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2025-01-01 00:34:41,930] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2025-01-01 00:34:41,994] [pool-1-thread-12] Initializing /data/qa-7642/8.dm4: [testng] [2025-01-01 00:34:42,373] [pool-1-thread-2] Initializing /data/jay/graphitedm3.dm3: [testng] [2025-01-01 00:34:42,480] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2025-01-01 00:34:42,641] [pool-1-thread-6] Initializing /data/jay/dnasample1.dm3: [testng] [2025-01-01 00:34:42,938] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2025-01-01 00:34:43,458] [pool-1-thread-5] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2025-01-01 00:34:43,642] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2025-01-01 00:34:44,095] [pool-1-thread-1] Initializing /data/samples/test-tiles.dm3: [testng] [2025-01-01 00:34:44,373] [pool-1-thread-10] Initializing /data/jay/dnasample.tif: [testng] [2025-01-01 00:34:45,004] [pool-1-thread-11] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2025-01-01 00:34:45,569] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2025-01-01 00:34:45,640] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2025-01-01 00:34:45,788] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2025-01-01 00:34:46,513] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2025-01-01 00:34:46,654] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2025-01-01 00:34:46,996] [pool-1-thread-7] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2025-01-01 00:34:47,494] [pool-1-thread-5] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2025-01-01 00:34:48,328] [pool-1-thread-9] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2025-01-01 00:34:48,387] [pool-1-thread-12] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2025-01-01 00:34:48,484] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2025-01-01 00:34:48,898] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2025-01-01 00:34:49,068] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2025-01-01 00:34:50,631] [pool-1-thread-7] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] [2025-01-01 00:34:51,011] [pool-1-thread-11] Initializing /data/qa-21761/example.dm4: [testng] [2025-01-01 00:34:51,084] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2025-01-01 00:34:51,608] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2025-01-01 00:34:51,704] [pool-1-thread-6] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2025-01-01 00:34:52,755] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2025-01-01 00:34:53,280] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2025-01-01 00:34:53,582] [pool-1-thread-5] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2025-01-01 00:34:54,705] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2025-01-01 00:34:54,930] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2025-01-01 00:34:55,154] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2025-01-01 00:34:55,907] [pool-1-thread-1] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2025-01-01 00:34:56,535] [pool-1-thread-4] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2025-01-01 00:34:56,636] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2025-01-01 00:34:56,805] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2025-01-01 00:34:56,877] [pool-1-thread-10] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2025-01-01 00:34:57,246] [pool-1-thread-3] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2025-01-01 00:34:57,983] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2025-01-01 00:34:58,063] [pool-1-thread-1] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2025-01-01 00:34:58,374] [pool-1-thread-11] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2025-01-01 00:34:59,093] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2025-01-01 00:34:59,180] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2025-01-01 00:34:59,603] [pool-1-thread-5] Initializing /data/jay/Carbon.34.dm3: [testng] [2025-01-01 00:35:00,168] [pool-1-thread-4] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2025-01-01 00:35:02,111] [pool-1-thread-7] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2025-01-01 00:35:02,676] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2025-01-01 00:35:03,160] [pool-1-thread-9] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2025-01-01 00:35:03,233] [pool-1-thread-10] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2025-01-01 00:35:03,461] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 13 seconds Finished: SUCCESS