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Started by upstream project "BIOFORMATS-test-repo" build number 305 originally caused by: Started by upstream project "Trigger" build number 327 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12131861496524373612.sh + '[' lim = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48238_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:35:53,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:35:53,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:35:53,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:35:53,637 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:35:53,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:35:53,638 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:35:53,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:35:53,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:35:53,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:35:53,639 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:35:53,639 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:35:53,639 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:35:53,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:35:53,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:35:53,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:35:53,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:35:53,828 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:35:53,828 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:35:53,828 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:35:53,829 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:35:53,829 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:35:53,829 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:35:53,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-01 00:35:53,838] [main] java.version = 17.0.2 [testng] 00:35:53,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:35:53,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:35:53,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-01_00-35-53.log] [testng] 00:35:53,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2025-01-01 00:35:53,885] [main] testng.directory = /data [testng] [2025-01-01 00:35:53,885] [main] testng.configDirectory = /config [testng] [2025-01-01 00:35:53,893] [main] testng.multiplier = 1.0 [testng] [2025-01-01 00:35:53,894] [main] testng.in-memory = false [testng] [2025-01-01 00:35:53,894] [main] testng.allow-missing = false [testng] [2025-01-01 00:35:53,894] [main] user.language = en [testng] [2025-01-01 00:35:53,895] [main] user.country = ${user.country} [testng] [2025-01-01 00:35:53,895] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-01 00:35:54,481] [main] ---------------------------------------- [testng] [2025-01-01 00:35:54,481] [main] Total files: 21 [testng] [2025-01-01 00:35:54,481] [main] Scan time: 0.586 s (27 ms/file) [testng] [2025-01-01 00:35:54,481] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-01 00:36:02,769] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:36:02,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:36:02,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:02,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-01_00-36-02.log] [testng] 00:36:02,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7672d109 - End of configuration. [testng] [2025-01-01 00:36:03,067] [pool-1-thread-12] Initializing /data/venu/Kontrolle0002.lim: [testng] 00:36:03,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:36:03,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:03,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-01_00-36-03.log] [testng] 00:36:03,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1931bb8d - End of configuration. [testng] [2025-01-01 00:36:03,267] [pool-1-thread-11] Initializing /data/venu/Kontrolle0021.lim: [testng] 00:36:03,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:36:03,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:03,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-01_00-36-03.log] [testng] 00:36:03,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@249c208d - End of configuration. [testng] [2025-01-01 00:36:03,465] [pool-1-thread-10] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:36:03,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:36:03,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:03,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-01_00-36-03.log] [testng] 00:36:03,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d259ec5 - End of configuration. [testng] [2025-01-01 00:36:03,662] [pool-1-thread-9] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:36:03,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:36:03,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:03,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-01_00-36-03.log] [testng] 00:36:03,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b790ac5 - End of configuration. [testng] [2025-01-01 00:36:03,861] [pool-1-thread-8] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:36:03,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:36:03,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:03,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-01_00-36-03.log] [testng] 00:36:03,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dfe91d3 - End of configuration. [testng] [2025-01-01 00:36:04,088] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:36:04,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:36:04,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:04,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-01_00-36-04.log] [testng] 00:36:04,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7655bcc9 - End of configuration. [testng] [2025-01-01 00:36:04,293] [pool-1-thread-6] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:36:04,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:36:04,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:04,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-01_00-36-04.log] [testng] 00:36:04,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e2920d - End of configuration. [testng] [2025-01-01 00:36:04,531] [pool-1-thread-5] Initializing /data/venu/Kontrolle0013.lim: [testng] 00:36:04,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:36:04,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:04,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-01_00-36-04.log] [testng] 00:36:04,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@312b0422 - End of configuration. [testng] [2025-01-01 00:36:04,882] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:36:04,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:36:04,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:04,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-01_00-36-04.log] [testng] 00:36:04,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289eed7 - End of configuration. [testng] [2025-01-01 00:36:05,282] [pool-1-thread-3] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:36:05,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:36:05,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:05,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-01_00-36-05.log] [testng] 00:36:05,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a38dfd9 - End of configuration. [testng] [2025-01-01 00:36:05,652] [pool-1-thread-2] Initializing /data/venu/Kontrolle0011.lim: [testng] 00:36:05,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:36:05,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:05,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-01_00-36-05.log] [testng] 00:36:05,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c316fe - End of configuration. [testng] [2025-01-01 00:36:10,645] [pool-1-thread-8] Initializing /data/venu/Kontrolle0019.lim: [testng] [2025-01-01 00:36:11,140] [pool-1-thread-4] Initializing /data/venu/Kontrolle0012.lim: [testng] [2025-01-01 00:36:11,498] [pool-1-thread-2] Initializing /data/venu/Kontrolle0017.lim: [testng] [2025-01-01 00:36:11,870] [pool-1-thread-9] Initializing /data/venu/Kontrolle0010.lim: [testng] [2025-01-01 00:36:12,216] [pool-1-thread-12] Initializing /data/venu/Kontrolle0008.lim: [testng] [2025-01-01 00:36:12,562] [pool-1-thread-7] Initializing /data/venu/Kontrolle0016.lim: [testng] [2025-01-01 00:36:13,002] [pool-1-thread-10] Initializing /data/venu/Kontrolle0015.lim: [testng] [2025-01-01 00:36:13,360] [pool-1-thread-3] Initializing /data/venu/Kontrolle0001.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 25 seconds Finished: SUCCESS