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Started by upstream project "BIOFORMATS-test-repo" build number 305 originally caused by: Started by upstream project "Trigger" build number 327 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15744992661149754409.sh + '[' apng = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48350_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:32:25,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:32:25,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 03:32:25,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:32:25,300 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:32:25,301 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:32:25,301 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:32:25,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:32:25,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:32:25,302 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:32:25,302 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:32:25,302 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:32:25,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:32:25,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:32:25,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:32:25,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:32:25,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:32:25,490 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:32:25,490 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:32:25,490 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:32:25,490 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:32:25,490 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 03:32:25,491 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 03:32:25,492 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-01 03:32:25,500] [main] java.version = 17.0.2 [testng] 03:32:25,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:32:25,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:25,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-01_03-32-25.log] [testng] 03:32:25,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2025-01-01 03:32:25,548] [main] testng.directory = /data [testng] [2025-01-01 03:32:25,548] [main] testng.configDirectory = /config [testng] [2025-01-01 03:32:25,557] [main] testng.multiplier = 1.0 [testng] [2025-01-01 03:32:25,557] [main] testng.in-memory = false [testng] [2025-01-01 03:32:25,558] [main] testng.allow-missing = false [testng] [2025-01-01 03:32:25,558] [main] user.language = en [testng] [2025-01-01 03:32:25,558] [main] user.country = ${user.country} [testng] [2025-01-01 03:32:25,558] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-01 03:32:26,050] [main] ---------------------------------------- [testng] [2025-01-01 03:32:26,050] [main] Total files: 21 [testng] [2025-01-01 03:32:26,050] [main] Scan time: 0.492 s (23 ms/file) [testng] [2025-01-01 03:32:26,050] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-01 03:32:28,085] [pool-1-thread-1] Initializing /data/qa-7473/n.tif: [testng] 03:32:28,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:32:28,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:28,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-01_03-32-28.log] [testng] 03:32:28,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36beeac8 - End of configuration. [testng] [2025-01-01 03:32:28,855] [pool-1-thread-12] Initializing /data/samples/william_wong04.png: [testng] 03:32:28,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:32:28,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:28,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-01_03-32-28.log] [testng] 03:32:28,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30edc2ef - End of configuration. [testng] [2025-01-01 03:32:28,889] [pool-1-thread-11] Initializing /data/samples/MoonPhases.png: [testng] 03:32:28,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:32:28,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:28,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-01_03-32-28.log] [testng] 03:32:28,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56677c4a - End of configuration. [testng] [2025-01-01 03:32:28,921] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 03:32:28,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:32:28,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:28,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-01_03-32-28.log] [testng] 03:32:28,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd1108c - End of configuration. [testng] [2025-01-01 03:32:28,953] [pool-1-thread-9] Initializing /data/samples/Sun.png: [testng] 03:32:28,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:32:28,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:28,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-01_03-32-28.log] [testng] 03:32:28,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8346a6a - End of configuration. [testng] [2025-01-01 03:32:28,984] [pool-1-thread-8] Initializing /data/samples/Matrix.png: [testng] 03:32:28,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:32:28,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:28,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-01_03-32-28.log] [testng] 03:32:28,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e631301 - End of configuration. [testng] [2025-01-01 03:32:29,013] [pool-1-thread-7] Initializing /data/samples/orbit.png: [testng] 03:32:29,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:32:29,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:29,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-01_03-32-29.log] [testng] 03:32:29,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6500c31d - End of configuration. [testng] [2025-01-01 03:32:29,044] [pool-1-thread-6] Initializing /data/samples/spinfox.png: [testng] 03:32:29,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:32:29,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:29,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-01_03-32-29.log] [testng] 03:32:29,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@256f65e8 - End of configuration. [testng] [2025-01-01 03:32:29,074] [pool-1-thread-5] Initializing /data/samples/william_wong02.png: [testng] 03:32:29,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:32:29,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:29,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-01_03-32-29.log] [testng] 03:32:29,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b40a0e1 - End of configuration. [testng] [2025-01-01 03:32:29,106] [pool-1-thread-4] Initializing /data/samples/phug_logo.png: [testng] 03:32:29,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:32:29,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:29,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-01_03-32-29.log] [testng] 03:32:29,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dbcbf - End of configuration. [testng] [2025-01-01 03:32:29,137] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_one.png: [testng] 03:32:29,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:32:29,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:29,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-01_03-32-29.log] [testng] 03:32:29,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c64119c - End of configuration. [testng] [2025-01-01 03:32:29,174] [pool-1-thread-2] Initializing /data/samples/daniel_coltri_two.png: [testng] 03:32:29,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:32:29,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:29,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-01_03-32-29.log] [testng] 03:32:29,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f50db82 - End of configuration. [testng] [2025-01-01 03:32:30,832] [pool-1-thread-2] Initializing /data/qa-7473/x.png: [testng] [2025-01-01 03:32:30,888] [pool-1-thread-8] Initializing /data/samples/william_wong05.png: [testng] [2025-01-01 03:32:30,909] [pool-1-thread-5] Initializing /data/samples/chompy2.png: [testng] [2025-01-01 03:32:31,245] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] [2025-01-01 03:32:31,265] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] [2025-01-01 03:32:31,287] [pool-1-thread-3] Initializing /data/samples/StarV838.png: [testng] [2025-01-01 03:32:31,309] [pool-1-thread-11] Initializing /data/samples/william_wong01.png: [testng] [2025-01-01 03:32:31,332] [pool-1-thread-10] Initializing /data/samples/PhugAnimation3.png: [testng] [2025-01-01 03:32:31,350] [pool-1-thread-9] Initializing /data/colin/test.sfstdge.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS