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Started by upstream project "BIOFORMATS-test-repo" build number 305 originally caused by: Started by upstream project "Trigger" build number 327 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins6772628903149022926.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48379_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:37:28,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:37:28,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 04:37:28,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:37:28,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:37:28,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:37:28,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:37:28,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:37:28,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:37:28,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:37:28,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:37:28,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:37:28,625 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:37:28,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:37:28,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:37:28,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:37:28,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:37:28,807 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:37:28,807 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:37:28,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:37:28,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:37:28,807 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 04:37:28,808 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 04:37:28,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-01 04:37:28,817] [main] java.version = 17.0.2 [testng] 04:37:28,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:37:28,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:37:28,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-01_04-37-28.log] [testng] 04:37:28,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2025-01-01 04:37:28,862] [main] testng.directory = /data [testng] [2025-01-01 04:37:28,863] [main] testng.configDirectory = /config [testng] [2025-01-01 04:37:28,871] [main] testng.multiplier = 1.0 [testng] [2025-01-01 04:37:28,871] [main] testng.in-memory = false [testng] [2025-01-01 04:37:28,872] [main] testng.allow-missing = false [testng] [2025-01-01 04:37:28,872] [main] user.language = en [testng] [2025-01-01 04:37:28,872] [main] user.country = ${user.country} [testng] [2025-01-01 04:37:28,872] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-01 04:37:48,749] [main] ---------------------------------------- [testng] [2025-01-01 04:37:48,749] [main] Total files: 31 [testng] [2025-01-01 04:37:48,749] [main] Scan time: 19.877 s (641 ms/file) [testng] [2025-01-01 04:37:48,749] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-01 04:38:10,969] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 04:38:10,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:38:10,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:10,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-01_04-38-10.log] [testng] 04:38:10,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f3b1ef5 - End of configuration. [testng] [2025-01-01 04:38:11,803] [pool-1-thread-12] Initializing /data/vikram/Captured 3.jp2: [testng] 04:38:11,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:38:11,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:11,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-01_04-38-11.log] [testng] 04:38:11,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42b6628a - End of configuration. [testng] [2025-01-01 04:38:12,298] [pool-1-thread-11] Initializing /data/david/C1R1_FOS.jp2: [testng] 04:38:12,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:38:12,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:12,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-01_04-38-12.log] [testng] 04:38:12,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@438c54cf - End of configuration. [testng] [2025-01-01 04:38:12,768] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jp2: [testng] 04:38:12,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:38:12,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:12,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-01_04-38-12.log] [testng] 04:38:12,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c5a6621 - End of configuration. [testng] [2025-01-01 04:38:13,820] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 04:38:13,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:38:13,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:13,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-01_04-38-13.log] [testng] 04:38:13,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65cedd6e - End of configuration. [testng] [2025-01-01 04:38:15,903] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 04:38:15,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:38:15,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:15,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-01_04-38-15.log] [testng] 04:38:15,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@238c4e21 - End of configuration. [testng] [2025-01-01 04:38:17,872] [pool-1-thread-7] Initializing /data/david/multichannel-2d test.jp2: [testng] 04:38:17,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:38:17,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:17,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-01_04-38-17.log] [testng] 04:38:17,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43013d29 - End of configuration. [testng] [2025-01-01 04:38:18,369] [pool-1-thread-6] Initializing /data/misc/clown-rgb.jpc: [testng] 04:38:18,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:38:18,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:18,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-01_04-38-18.log] [testng] 04:38:18,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eec0ea6 - End of configuration. [testng] [2025-01-01 04:38:19,013] [pool-1-thread-5] Initializing /data/kraig/head.jp2: [testng] 04:38:19,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:38:19,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:19,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-01_04-38-19.log] [testng] 04:38:19,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e041a58 - End of configuration. [testng] [2025-01-01 04:38:19,678] [pool-1-thread-4] Initializing /data/big-images/2kx2k.jpf: [testng] 04:38:19,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:38:19,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:19,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-01_04-38-19.log] [testng] 04:38:19,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ffe561c - End of configuration. [testng] [2025-01-01 04:38:20,149] [pool-1-thread-3] Initializing /data/frans/flower.jp2: [testng] 04:38:20,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:38:20,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:20,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-01_04-38-20.log] [testng] 04:38:20,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75d0499a - End of configuration. [testng] [2025-01-01 04:38:20,585] [pool-1-thread-2] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 04:38:20,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:38:20,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:20,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-01_04-38-20.log] [testng] 04:38:20,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52cdec01 - End of configuration. [testng] [2025-01-01 04:38:27,516] [pool-1-thread-10] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-01-01 04:38:28,193] [pool-1-thread-6] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2025-01-01 04:38:28,706] [pool-1-thread-12] Initializing /data/big-images/8kx8k.jpf: [testng] [2025-01-01 04:38:29,148] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2: [testng] [2025-01-01 04:38:30,794] [pool-1-thread-9] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2025-01-01 04:38:32,286] [pool-1-thread-8] Initializing /data/david/cy5-tph.jp2: [testng] [2025-01-01 04:38:35,746] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-01-01 04:38:36,847] [pool-1-thread-10] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2025-01-01 04:38:38,463] [pool-1-thread-4] Initializing /data/aryeh/flour 12.jp2: [testng] [2025-01-01 04:38:43,703] [pool-1-thread-4] Initializing /data/vikram/Captured 5.jp2: [testng] [2025-01-01 04:38:44,227] [pool-1-thread-3] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-01-01 04:38:44,933] [pool-1-thread-5] Initializing /data/david/000000_000001.jpx: [testng] [2025-01-01 04:38:48,592] [pool-1-thread-10] Initializing /data/venu/Multichannel 3.jp2: [testng] [2025-01-01 04:38:49,595] [pool-1-thread-6] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2025-01-01 04:38:50,863] [pool-1-thread-4] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2025-01-01 04:38:51,234] [pool-1-thread-11] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-01-01 04:38:54,692] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2025-01-01 04:38:57,176] [pool-1-thread-5] Initializing /data/vikram/Captured 1.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 20 seconds Finished: SUCCESS