![[Jenkins]](/jenkins/static/c7b3cdfa/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 306 originally caused by: Started by upstream project "Trigger" build number 328 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins13577381849893832242.sh + '[' samples = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48418_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:49:18,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:49:18,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:49:18,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:18,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:18,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:49:18,032 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:49:18,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:49:18,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:18,033 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:18,033 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:49:18,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:49:18,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:49:18,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:49:18,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:49:18,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:49:18,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:49:18,223 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:49:18,223 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:49:18,223 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:49:18,223 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:49:18,223 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:49:18,224 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:49:18,224 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-02 00:49:18,233] [main] java.version = 21 [testng] 00:49:18,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:49:18,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:18,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-02_00-49-18.log] [testng] 00:49:18,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2025-01-02 00:49:18,285] [main] testng.directory = /data [testng] [2025-01-02 00:49:18,285] [main] testng.configDirectory = /config [testng] [2025-01-02 00:49:18,299] [main] testng.multiplier = 1.0 [testng] [2025-01-02 00:49:18,300] [main] testng.in-memory = false [testng] [2025-01-02 00:49:18,300] [main] testng.allow-missing = false [testng] [2025-01-02 00:49:18,300] [main] user.language = en [testng] [2025-01-02 00:49:18,300] [main] user.country = ${user.country} [testng] [2025-01-02 00:49:18,300] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-02 00:50:00,703] [main] ---------------------------------------- [testng] [2025-01-02 00:50:00,703] [main] Total files: 164 [testng] [2025-01-02 00:50:00,704] [main] Scan time: 42.402 s (258 ms/file) [testng] [2025-01-02 00:50:00,705] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-02 00:50:59,193] [pool-1-thread-1] Initializing /data/sdub/sdub.pattern: [testng] 00:50:59,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:50:59,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:59,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-02_00-50-59.log] [testng] 00:50:59,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e2ca7ed - End of configuration. [testng] [2025-01-02 00:51:05,819] [pool-1-thread-12] Initializing /data/ome/011B1_Morph.HTD: [testng] 00:51:05,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:51:05,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:05,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-02_00-51-05.log] [testng] 00:51:05,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@418509a0 - End of configuration. [testng] [2025-01-02 00:51:07,230] [pool-1-thread-11] Initializing /data/openjpeg/Cevennes1.ppm: [testng] 00:51:07,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:51:07,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:07,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-02_00-51-07.log] [testng] 00:51:07,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50a0bd13 - End of configuration. [testng] [2025-01-02 00:51:07,290] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne2.ppm: [testng] 00:51:07,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:51:07,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:07,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-02_00-51-07.log] [testng] 00:51:07,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d530dc - End of configuration. [testng] [2025-01-02 00:51:07,367] [pool-1-thread-9] Initializing /data/openjpeg/thumb_facade.jpg: [testng] 00:51:07,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:51:07,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:07,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-02_00-51-07.log] [testng] 00:51:07,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a96e8e6 - End of configuration. [testng] [2025-01-02 00:51:07,466] [pool-1-thread-8] Initializing /data/openjpeg/Rome.jp2: [testng] 00:51:07,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:51:07,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:07,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-02_00-51-07.log] [testng] 00:51:07,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7731993f - End of configuration. [testng] [2025-01-02 00:51:07,765] [pool-1-thread-7] Initializing /data/openjpeg/Facade.pnm: [testng] 00:51:07,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:51:07,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:07,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-02_00-51-07.log] [testng] 00:51:07,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a732a5 - End of configuration. [testng] [2025-01-02 00:51:07,928] [pool-1-thread-6] Initializing /data/ome/Adultmidsection.lsm: [testng] 00:51:07,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:51:07,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:07,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-02_00-51-07.log] [testng] 00:51:07,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d1141da - End of configuration. [testng] [2025-01-02 00:51:08,227] [pool-1-thread-5] Initializing /data/10-31 E1/10-31 E1.tif: [testng] 00:51:08,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:51:08,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:08,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-02_00-51-08.log] [testng] 00:51:08,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a47d8e4 - End of configuration. [testng] [2025-01-02 00:51:08,905] [pool-1-thread-4] Initializing /data/kidney_TFl/kidney_TFl.pattern: [testng] 00:51:08,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:51:08,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:08,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-02_00-51-08.log] [testng] 00:51:08,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67791326 - End of configuration. [testng] [2025-01-02 00:51:09,528] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Cevennes1.jpg: [testng] 00:51:09,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:51:09,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:09,529 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-02_00-51-09.log] [testng] 00:51:09,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5acfca37 - End of configuration. [testng] [2025-01-02 00:51:09,575] [pool-1-thread-2] Initializing /data/openjpeg/Cevennes1.bmp: [testng] 00:51:09,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:51:09,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:09,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-02_00-51-09.log] [testng] 00:51:09,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22baa3ad - End of configuration. [testng] [2025-01-02 00:51:12,929] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Rome.jpg: [testng] [2025-01-02 00:51:13,015] [pool-1-thread-9] Initializing /data/openjpeg/Facade.bmp: [testng] [2025-01-02 00:51:13,080] [pool-1-thread-7] Initializing /data/openjpeg/Cevennes2.bmp: [testng] [2025-01-02 00:51:13,285] [pool-1-thread-11] Initializing /data/ome/C1midmusnorm.lsm: [testng] [2025-01-02 00:51:13,699] [pool-1-thread-10] Initializing /data/openjpeg/Rome.ppm: [testng] [2025-01-02 00:51:14,079] [pool-1-thread-6] Initializing /data/mouse-kidney/mouse-kidney.lif: [testng] [2025-01-02 00:51:14,526] [pool-1-thread-2] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg: [testng] [2025-01-02 00:51:14,738] [pool-1-thread-7] Initializing /data/openjpeg/thumb_Bretagne2.jpg: [testng] [2025-01-02 00:51:15,107] [pool-1-thread-10] Initializing /data/ome/C1.lsm: [testng] [2025-01-02 00:51:15,708] [pool-1-thread-8] Initializing /data/openjpeg/FacadeERROPJ.bmp: [testng] [2025-01-02 00:51:15,800] [pool-1-thread-5] Initializing /data/ome/worm.tiff: [testng] [2025-01-02 00:51:17,186] [pool-1-thread-3] Initializing /data/ome/t1_pos1-0_5x.lsm: [testng] [2025-01-02 00:51:18,444] [pool-1-thread-7] Initializing /data/openjpeg/Bretagne1.ppm: [testng] [2025-01-02 00:51:18,571] [pool-1-thread-2] Initializing /data/openjpeg/Cevennes2.ppm: [testng] [2025-01-02 00:51:18,653] [pool-1-thread-6] Initializing /data/ome/Cmidmusgfp1.lsm: [testng] [2025-01-02 00:51:19,193] [pool-1-thread-11] Initializing /data/ome/arwen0205_raw00201.pic: [testng] [2025-01-02 00:51:19,720] [pool-1-thread-9] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK: [testng] [2025-01-02 00:51:20,573] [pool-1-thread-4] Initializing /data/ome/embryo.lsm: [testng] [2025-01-02 00:51:21,718] [pool-1-thread-7] Initializing /data/openjpeg/thumb_Cevennes2.jpg: [testng] [2025-01-02 00:51:21,861] [pool-1-thread-2] Initializing /data/openjpeg/Bretagne2.bmp: [testng] [2025-01-02 00:51:22,062] [pool-1-thread-10] Initializing /data/openjpeg/thumb_Bretagne1.jpg: [testng] [2025-01-02 00:51:22,687] [pool-1-thread-8] Initializing /data/ome/cb_1.r3d: [testng] [2025-01-02 00:51:24,124] [pool-1-thread-6] Initializing /data/openjpeg/FacadeERROPJW.bmp: [testng] [2025-01-02 00:51:24,299] [pool-1-thread-3] Initializing /data/openjpeg/Rome.bmp: [testng] [2025-01-02 00:51:25,979] [pool-1-thread-7] Initializing /data/ome/654Atemp.stk: [testng] [2025-01-02 00:51:27,123] [pool-1-thread-10] Initializing /data/ome/C1lowmusgfp.lsm: [testng] [2025-01-02 00:51:27,623] [pool-1-thread-4] Initializing /data/openjpeg/thumb_Speedway.jpg: [testng] [2025-01-02 00:51:27,731] [pool-1-thread-9] Initializing /data/ome/210502-0min-NFKB-4.r3d: [testng] [2025-01-02 00:51:27,900] [pool-1-thread-2] Initializing /data/ome/Cpharynxzs1.lsm: [testng] [2025-01-02 00:51:28,398] [pool-1-thread-8] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK: [testng] [2025-01-02 00:51:29,238] [pool-1-thread-5] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF: [testng] [2025-01-02 00:51:30,246] [pool-1-thread-3] Initializing /data/ome/CHOBI_d3d.dv: [testng] [2025-01-02 00:51:30,726] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes1.j2k: [testng] [2025-01-02 00:51:31,613] [pool-1-thread-6] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF: [testng] [2025-01-02 00:51:32,563] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.j2k: [testng] [2025-01-02 00:51:33,185] [pool-1-thread-9] Initializing /data/ome/anusgfpzs.lsm: [testng] [2025-01-02 00:51:33,605] [pool-1-thread-10] Initializing /data/ome/t0_pos1-0_5x.lsm: [testng] [2025-01-02 00:51:35,721] [pool-1-thread-2] Initializing /data/ome/tinyTest.d3d.dv: [testng] [2025-01-02 00:51:36,334] [pool-1-thread-5] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk: [testng] [2025-01-02 00:51:37,512] [pool-1-thread-6] Initializing /data/openjpeg/Cevennes2.jp2: [testng] [2025-01-02 00:51:38,004] [pool-1-thread-9] Initializing /data/openjpeg/Bretagne1.bmp: [testng] [2025-01-02 00:51:38,108] [pool-1-thread-7] Initializing /data/ome/n2_plate18_P24_w1.tif: [testng] [2025-01-02 00:51:39,099] [pool-1-thread-2] Initializing /data/openjpeg/Bretagne2.j2k: [testng] [2025-01-02 00:51:40,727] [pool-1-thread-10] Initializing /data/TAABA/TAABA.pattern: [testng] [2025-01-02 00:51:55,046] [pool-1-thread-3] Initializing /data/ome/tiffany.color.tiff: [testng] [2025-01-02 00:51:56,097] [pool-1-thread-11] Initializing /data/ome/compressed2ChZ.lsm: [testng] [2025-01-02 00:51:56,571] [pool-1-thread-9] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 3127, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 37 seconds Finished: SUCCESS