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Started by upstream project "BIOFORMATS-test-repo" build number 306 originally caused by: Started by upstream project "Trigger" build number 328 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16060979362588538703.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48430_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:00:43,466 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:00:43,468 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:00:43,468 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:00:43,469 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:00:43,469 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:00:43,470 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:00:43,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:00:43,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:00:43,471 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:00:43,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:00:43,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:00:43,472 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:00:43,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:00:43,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:00:43,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:00:43,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:00:43,681 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:00:43,681 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:00:43,681 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:00:43,681 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:00:43,681 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:00:43,683 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:00:43,683 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 212 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-02 01:00:43,692] [main] java.version = 21 [testng] 01:00:43,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:00:43,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:00:43,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-02_01-00-43.log] [testng] 01:00:43,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2025-01-02 01:00:43,743] [main] testng.directory = /data [testng] [2025-01-02 01:00:43,744] [main] testng.configDirectory = /config [testng] [2025-01-02 01:00:43,753] [main] testng.multiplier = 1.0 [testng] [2025-01-02 01:00:43,753] [main] testng.in-memory = false [testng] [2025-01-02 01:00:43,754] [main] testng.allow-missing = false [testng] [2025-01-02 01:00:43,754] [main] user.language = en [testng] [2025-01-02 01:00:43,754] [main] user.country = ${user.country} [testng] [2025-01-02 01:00:43,754] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-02 01:01:04,509] [main] ---------------------------------------- [testng] [2025-01-02 01:01:04,509] [main] Total files: 259 [testng] [2025-01-02 01:01:04,509] [main] Scan time: 20.755 s (80 ms/file) [testng] [2025-01-02 01:01:04,510] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-02 01:07:42,543] [pool-1-thread-1] Initializing /data/marc/V0606L.oib: [testng] 01:07:42,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:07:42,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:42,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-02_01-07-42.log] [testng] 01:07:42,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d07992 - End of configuration. [testng] [2025-01-02 01:07:43,933] [pool-1-thread-12] Initializing /data/chris/missegragation-15.oib: [testng] 01:07:43,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:07:43,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:43,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-02_01-07-43.log] [testng] 01:07:43,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dcf08ec - End of configuration. [testng] [2025-01-02 01:07:44,209] [pool-1-thread-11] Initializing /data/johannes/step5b.bmp: [testng] 01:07:44,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:07:44,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:44,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-02_01-07-44.log] [testng] 01:07:44,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35027bb6 - End of configuration. [testng] [2025-01-02 01:07:44,288] [pool-1-thread-10] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 01:07:44,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:07:44,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:44,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-02_01-07-44.log] [testng] 01:07:44,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a94273 - End of configuration. [testng] [2025-01-02 01:07:44,935] [pool-1-thread-9] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 01:07:44,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:07:44,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:44,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-02_01-07-44.log] [testng] 01:07:44,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a18e47 - End of configuration. [testng] [2025-01-02 01:07:46,133] [pool-1-thread-8] Initializing /data/brian/PA-GFP-3.oib: [testng] 01:07:46,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:07:46,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:46,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-02_01-07-46.log] [testng] 01:07:46,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@319f3339 - End of configuration. [testng] [2025-01-02 01:07:46,634] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] 01:07:46,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:07:46,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:46,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-02_01-07-46.log] [testng] 01:07:46,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac4219 - End of configuration. [testng] [2025-01-02 01:07:47,457] [pool-1-thread-6] Initializing /data/molly/11OCT8.OIF: [testng] 01:07:47,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:07:47,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:47,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-02_01-07-47.log] [testng] 01:07:47,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55d3b552 - End of configuration. [testng] [2025-01-02 01:07:53,387] [pool-1-thread-5] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 01:07:53,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:07:53,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:53,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-02_01-07-53.log] [testng] 01:07:53,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c1a9a74 - End of configuration. [testng] [2025-01-02 01:07:53,708] [pool-1-thread-4] Initializing /data/simon/never_worked.oib: [testng] 01:07:53,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:07:53,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:53,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-02_01-07-53.log] [testng] 01:07:53,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbcfc18 - End of configuration. [testng] [2025-01-02 01:07:54,032] [pool-1-thread-3] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] 01:07:54,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:07:54,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:54,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-02_01-07-54.log] [testng] 01:07:54,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@118ef4b4 - End of configuration. [testng] [2025-01-02 01:07:54,505] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] 01:07:54,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:07:54,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:54,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-02_01-07-54.log] [testng] 01:07:54,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf61f86 - End of configuration. [testng] [2025-01-02 01:07:59,876] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2025-01-02 01:08:01,528] [pool-1-thread-12] Initializing /data/christian/20min.oif: [testng] [2025-01-02 01:08:01,948] [pool-1-thread-3] Initializing /data/glen/singlesimul.oib: [testng] [2025-01-02 01:08:02,342] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2025-01-02 01:08:02,760] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2025-01-02 01:08:04,549] [pool-1-thread-7] Initializing /data/glen/singlesimul.oif: [testng] [2025-01-02 01:08:06,036] [pool-1-thread-8] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2025-01-02 01:08:10,207] [pool-1-thread-5] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2025-01-02 01:08:15,637] [pool-1-thread-3] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2025-01-02 01:08:39,971] [pool-1-thread-4] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2025-01-02 01:08:41,185] [pool-1-thread-11] Initializing /data/glen/singleseqframe.oif: [testng] [2025-01-02 01:08:41,977] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2025-01-02 01:08:43,509] [pool-1-thread-1] Initializing /data/francesco/fGfp.c15.oib: [testng] [2025-01-02 01:08:47,566] [pool-1-thread-8] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2025-01-02 01:08:48,544] [pool-1-thread-1] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2025-01-02 01:08:49,072] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2025-01-02 01:08:53,159] [pool-1-thread-8] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2025-01-02 01:08:57,202] [pool-1-thread-12] Initializing /data/monica/Image0056.oif: [testng] [2025-01-02 01:08:57,838] [pool-1-thread-1] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2025-01-02 01:08:58,960] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oib: [testng] [2025-01-02 01:08:59,679] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2025-01-02 01:09:01,537] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2025-01-02 01:09:06,572] [pool-1-thread-1] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2025-01-02 01:09:08,268] [pool-1-thread-5] Initializing /data/glen/simulstack.oib: [testng] [2025-01-02 01:09:09,262] [pool-1-thread-7] Initializing /data/yasunori/series_1.oib: [testng] [2025-01-02 01:09:13,122] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2025-01-02 01:09:14,049] [pool-1-thread-5] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2025-01-02 01:09:15,499] [pool-1-thread-7] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2025-01-02 01:09:17,566] [pool-1-thread-11] Initializing /data/glen/4205basal106072.oif: [testng] [2025-01-02 01:09:23,713] [pool-1-thread-1] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2025-01-02 01:09:24,968] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2025-01-02 01:09:29,597] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2025-01-02 01:09:30,519] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2025-01-02 01:09:33,684] [pool-1-thread-1] Initializing /data/johannes/step2.bmp: [testng] [2025-01-02 01:09:33,817] [pool-1-thread-12] Initializing /data/aryeh/1h.oib: [testng] [2025-01-02 01:09:35,491] [pool-1-thread-7] Initializing /data/glen/seqlinestack.oif: [testng] [2025-01-02 01:09:40,971] [pool-1-thread-1] Initializing /data/molly/11OCT11.OIF: [testng] [2025-01-02 01:09:58,097] [pool-1-thread-12] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2025-01-02 01:10:02,880] [pool-1-thread-10] Initializing /data/david/Image0016.oib: [testng] [2025-01-02 01:10:05,497] [pool-1-thread-12] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2025-01-02 01:10:07,530] [pool-1-thread-10] Initializing /data/brian/LILY POLLEN.oib: [testng] [2025-01-02 01:10:12,314] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2025-01-02 01:10:15,514] [pool-1-thread-10] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2025-01-02 01:10:20,258] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] [2025-01-02 01:10:20,964] [pool-1-thread-5] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2025-01-02 01:10:24,796] [pool-1-thread-10] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2025-01-02 01:10:29,901] [pool-1-thread-10] Initializing /data/qa-17748/Image0098.oib: [testng] [2025-01-02 01:10:30,939] [pool-1-thread-12] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2025-01-02 01:10:35,533] [pool-1-thread-10] Initializing /data/brian/Kaede15.oib: [testng] [2025-01-02 01:10:36,609] [pool-1-thread-12] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2025-01-02 01:10:49,126] [pool-1-thread-10] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2025-01-02 01:10:53,874] [pool-1-thread-10] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2025-01-02 01:11:01,491] [pool-1-thread-10] Initializing /data/molly/11OCT2.OIF: [testng] [2025-01-02 01:12:16,809] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2025-01-02 01:12:50,672] [pool-1-thread-4] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2025-01-02 01:12:56,170] [pool-1-thread-4] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2025-01-02 01:13:03,931] [pool-1-thread-4] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2025-01-02 01:14:13,126] [pool-1-thread-12] Initializing /data/molly/11OCT3.OIF: [testng] [2025-01-02 01:18:16,496] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2025-01-02 01:18:21,762] [pool-1-thread-9] Initializing /data/yoshihito/XY.oif: [testng] [2025-01-02 01:18:48,263] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2025-01-02 01:18:55,508] [pool-1-thread-9] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2025-01-02 01:19:02,099] [pool-1-thread-9] Initializing /data/aryeh/030408 2 1.oib: [testng] [2025-01-02 01:19:08,923] [pool-1-thread-9] Initializing /data/stefan/cytosol_03e.oib: [testng] [2025-01-02 01:19:18,510] [pool-1-thread-9] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2025-01-02 01:19:42,071] [pool-1-thread-9] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2025-01-02 01:22:03,800] [pool-1-thread-9] Initializing /data/glen/Null file/test change.oif: [testng] [2025-01-02 01:22:25,775] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2025-01-02 01:22:30,461] [pool-1-thread-2] Initializing /data/molly/11OCT4.OIF: [testng] [2025-01-02 01:22:46,456] [pool-1-thread-4] Initializing /data/glen/singleseqline.oif: [testng] [2025-01-02 01:22:49,039] [pool-1-thread-9] Initializing /data/molly/11OCT6.OIF: [testng] [2025-01-02 01:23:33,403] [pool-1-thread-4] Initializing /data/david/Image0016.oif: [testng] [2025-01-02 01:24:42,412] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2025-01-02 01:24:48,162] [pool-1-thread-4] Initializing /data/brian/lambda02nm.oib: [testng] [2025-01-02 01:24:52,749] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2025-01-02 01:25:00,858] [pool-1-thread-4] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2025-01-02 01:25:29,987] [pool-1-thread-4] Initializing /data/glen/Image0002.oif: [testng] [2025-01-02 01:26:05,188] [pool-1-thread-5] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2025-01-02 01:26:40,455] [pool-1-thread-5] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2025-01-02 01:26:47,345] [pool-1-thread-5] Initializing /data/stefan/cytosol_08b.oif: [testng] [2025-01-02 01:28:53,939] [pool-1-thread-6] Initializing /data/brian/CFP-GFP2.oib: [testng] [2025-01-02 01:29:01,019] [pool-1-thread-6] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2025-01-02 01:29:07,344] [pool-1-thread-6] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2025-01-02 01:29:21,133] [pool-1-thread-8] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2025-01-02 01:29:50,186] [pool-1-thread-6] Initializing /data/glen/notsaturated.oif: [testng] [2025-01-02 01:29:57,188] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2025-01-02 01:30:05,781] [pool-1-thread-8] Initializing /data/sten/01.oib: [testng] [2025-01-02 01:30:13,666] [pool-1-thread-8] Initializing /data/pedro/plv-test.oib: [testng] [2025-01-02 01:30:21,280] [pool-1-thread-8] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2025-01-02 01:30:29,142] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2025-01-02 01:30:37,643] [pool-1-thread-8] Initializing /data/glen/simulstack.oif: [testng] [2025-01-02 01:34:44,725] [pool-1-thread-1] Initializing /data/glen/notsaturated.oib: [testng] [2025-01-02 01:34:51,887] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2025-01-02 01:34:59,942] [pool-1-thread-1] Initializing /data/molly/11OCT9.OIF: [testng] [2025-01-02 01:36:01,808] [pool-1-thread-11] Initializing /data/stefan/yc2_live-03.oib: [testng] [2025-01-02 01:36:13,555] [pool-1-thread-11] Initializing /data/glen/singleseqline.oib: [testng] [2025-01-02 01:36:20,631] [pool-1-thread-11] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2025-01-02 01:36:29,040] [pool-1-thread-11] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2025-01-02 01:36:38,553] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2025-01-02 01:36:43,539] [pool-1-thread-7] Initializing /data/johannes/step4b.bmp: [testng] [2025-01-02 01:36:47,103] [pool-1-thread-11] Initializing /data/marc/V0606J.oib: [testng] [2025-01-02 01:36:49,773] [pool-1-thread-7] Initializing /data/yoshihito/XY.oib: [testng] [2025-01-02 01:36:57,477] [pool-1-thread-7] Initializing /data/tom/RGB-1.avi: [testng] [2025-01-02 01:37:02,516] [pool-1-thread-7] Initializing /data/aryeh/control_test.oib: [testng] [2025-01-02 01:37:13,394] [pool-1-thread-11] Initializing /data/stefan/cytosol_01a.oif: [testng] [2025-01-02 01:39:00,119] [pool-1-thread-7] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2025-01-02 01:39:06,303] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2025-01-02 01:39:11,605] [pool-1-thread-7] Initializing /data/jae/Image0001.oib: [testng] [2025-01-02 01:39:17,869] [pool-1-thread-7] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2025-01-02 01:39:23,906] [pool-1-thread-7] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2025-01-02 01:39:29,412] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2025-01-02 01:39:31,544] [pool-1-thread-7] Initializing /data/molly/11OCT10.OIF: [testng] [2025-01-02 01:40:07,848] [pool-1-thread-6] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2025-01-02 01:40:13,867] [pool-1-thread-6] Initializing /data/allan/62909#1.oib: [testng] [2025-01-02 01:40:17,995] [pool-1-thread-6] Initializing /data/molly/11OCT5.OIF: [testng] [2025-01-02 01:45:03,123] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] [2025-01-02 01:45:09,087] [pool-1-thread-2] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2025-01-02 01:45:17,287] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2025-01-02 01:45:25,326] [pool-1-thread-2] Initializing /data/karl/Image0009.oib: [testng] [2025-01-02 01:45:29,961] [pool-1-thread-2] Initializing /data/michael/CELL3.oib: [testng] [2025-01-02 01:45:35,230] [pool-1-thread-2] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2025-01-02 01:45:41,622] [pool-1-thread-2] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2025-01-02 01:46:13,539] [pool-1-thread-4] Initializing /data/molly/11OCT7.OIF: [testng] [2025-01-02 01:48:21,268] [pool-1-thread-2] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2025-01-02 01:48:54,872] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2025-01-02 01:48:56,508] [pool-1-thread-9] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2025-01-02 01:49:02,746] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2025-01-02 01:49:08,895] [pool-1-thread-8] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2025-01-02 01:49:15,003] [pool-1-thread-8] Initializing /data/glen/Null file/test no change.oif: [testng] [2025-01-02 01:49:41,147] [pool-1-thread-8] Initializing /data/glen/singleseqframe.oib: [testng] [2025-01-02 01:49:44,775] [pool-1-thread-8] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2025-01-02 01:52:06,344] [pool-1-thread-10] Initializing /data/johannes/step4.bmp: [testng] 02:12:14,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:12:14,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:14,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-02_02-12-14.log] [testng] 02:12:14,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a3bc507 - End of configuration. [testng] 02:31:56,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:31:56,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:56,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-02_02-31-56.log] [testng] 02:31:56,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb169ab - End of configuration. [testng] 03:03:14,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:03:14,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:14,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-02_03-03-14.log] [testng] 03:03:14,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50fccd01 - End of configuration. [testng] 03:08:22,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:08:22,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:22,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-02_03-08-22.log] [testng] 03:08:22,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27a9fe9e - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 127 minutes 41 seconds Finished: SUCCESS