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Started by upstream project "BIOFORMATS-test-repo" build number 306 originally caused by: Started by upstream project "Trigger" build number 328 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins1905163884372363109.sh + '[' picoquant = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48458_merge_ci -v /uod/idr/repos/curated/picoquant:/data -v /uod/idr-scratch/merge-ci/curated/picoquant:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:47:31,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:47:31,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:47:31,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:47:31,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:47:31,462 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:47:31,462 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:47:31,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:47:31,463 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:47:31,463 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2d710f1a - End of configuration. [testng] 01:47:31,464 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@13fd2ccd - Registering current configuration as safe fallback point [testng] 01:47:31,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@b9b00e0 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 651 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-02 01:47:31,474] [main] java.version = 21 [testng] 01:47:31,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:47:31,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:31,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-02_01-47-31.log] [testng] 01:47:31,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2025-01-02 01:47:31,620] [main] testng.directory = /data [testng] [2025-01-02 01:47:31,620] [main] testng.configDirectory = /config [testng] [2025-01-02 01:47:31,965] [main] testng.multiplier = 1.0 [testng] [2025-01-02 01:47:31,966] [main] testng.in-memory = false [testng] [2025-01-02 01:47:31,966] [main] testng.allow-missing = false [testng] [2025-01-02 01:47:31,966] [main] user.language = en [testng] [2025-01-02 01:47:31,967] [main] user.country = ${user.country} [testng] [2025-01-02 01:47:31,967] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-02 01:47:37,046] [main] ---------------------------------------- [testng] [2025-01-02 01:47:37,046] [main] Total files: 8 [testng] [2025-01-02 01:47:37,046] [main] Scan time: 5.079 s (634 ms/file) [testng] [2025-01-02 01:47:37,047] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 8 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-02 01:47:41,734] [pool-1-thread-1] Initializing /data/qa-9505/GFP_and_mRFP_FRET.bin: [testng] 01:47:41,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:47:41,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:41,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-02_01-47-41.log] [testng] 01:47:41,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eecc29e - End of configuration. [testng] [2025-01-02 01:47:42,709] [pool-1-thread-8] Initializing /data/neil/PollenGrainsSymPhoTime.png: [testng] 01:47:42,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:47:42,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:42,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-02_01-47-42.log] [testng] 01:47:42,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a18c3dd - End of configuration. [testng] [2025-01-02 01:47:42,749] [pool-1-thread-7] Initializing /data/qa-17134/VLDLR_mGFP_with_ligand.bin: [testng] 01:47:42,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:47:42,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:42,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-02_01-47-42.log] [testng] 01:47:42,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41041080 - End of configuration. [testng] [2025-01-02 01:47:43,444] [pool-1-thread-6] Initializing /data/neil/PollenGrains.bin: [testng] 01:47:43,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:47:43,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:43,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-02_01-47-43.log] [testng] 01:47:43,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47ca52ea - End of configuration. [testng] [2025-01-02 01:47:44,545] [pool-1-thread-5] Initializing /data/qa-9505/CENP-labelled_cells_for_FRET.bin: [testng] 01:47:44,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:47:44,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:44,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-02_01-47-44.log] [testng] 01:47:44,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bbc3868 - End of configuration. [testng] [2025-01-02 01:47:46,550] [pool-1-thread-4] Initializing /data/qa-17095/IRF_256.bin: [testng] 01:47:46,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:47:46,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:46,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-02_01-47-46.log] [testng] 01:47:46,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f464403 - End of configuration. [testng] [2025-01-02 01:47:47,582] [pool-1-thread-3] Initializing /data/qa-9434/DaisyPollen.bin: [testng] 01:47:47,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:47:47,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:47,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-02_01-47-47.log] [testng] 01:47:47,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@342a5d84 - End of configuration. [testng] [2025-01-02 01:47:48,236] [pool-1-thread-2] Initializing /data/neil/PollenGrains.bmp: [testng] 01:47:48,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:47:48,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:48,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-02_01-47-48.log] [testng] 01:47:48,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f395f6 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 424, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 42 seconds Finished: SUCCESS