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Started by upstream project "BIOFORMATS-test-repo" build number 306 originally caused by: Started by upstream project "Trigger" build number 328 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8862589318363156522.sh + '[' avi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48474_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:04:35,713 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:04:35,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 02:04:35,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:04:35,715 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:04:35,716 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:04:35,716 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:04:35,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:04:35,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:04:35,717 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:04:35,718 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:04:35,718 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:04:35,718 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:04:35,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:04:35,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:04:35,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:04:35,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:04:35,944 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:04:35,945 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:04:35,945 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:04:35,945 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:04:35,945 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 02:04:35,946 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 02:04:35,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 229 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-02 02:04:35,956] [main] java.version = 21 [testng] 02:04:35,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:04:35,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:36,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-02_02-04-35.log] [testng] 02:04:36,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2025-01-02 02:04:36,008] [main] testng.directory = /data [testng] [2025-01-02 02:04:36,008] [main] testng.configDirectory = /config [testng] [2025-01-02 02:04:36,018] [main] testng.multiplier = 1.0 [testng] [2025-01-02 02:04:36,018] [main] testng.in-memory = false [testng] [2025-01-02 02:04:36,018] [main] testng.allow-missing = false [testng] [2025-01-02 02:04:36,018] [main] user.language = en [testng] [2025-01-02 02:04:36,018] [main] user.country = ${user.country} [testng] [2025-01-02 02:04:36,019] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-02 02:04:40,847] [main] ---------------------------------------- [testng] [2025-01-02 02:04:40,847] [main] Total files: 40 [testng] [2025-01-02 02:04:40,848] [main] Scan time: 4.828 s (120 ms/file) [testng] [2025-01-02 02:04:40,848] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-02 02:05:29,994] [pool-1-thread-1] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 02:05:29,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:05:29,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:29,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-02_02-05-29.log] [testng] 02:05:29,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17ec1b87 - End of configuration. [testng] [2025-01-02 02:05:30,275] [pool-1-thread-12] Initializing /data/curtis/mri-stack-bf.avi: [testng] 02:05:30,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:05:30,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:30,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-02_02-05-30.log] [testng] 02:05:30,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a40a8f - End of configuration. [testng] [2025-01-02 02:05:30,546] [pool-1-thread-11] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 02:05:30,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:05:30,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:30,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-02_02-05-30.log] [testng] 02:05:30,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2012bc6b - End of configuration. [testng] [2025-01-02 02:05:30,778] [pool-1-thread-10] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] 02:05:30,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:05:30,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:30,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-02_02-05-30.log] [testng] 02:05:30,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bb8c9ec - End of configuration. [testng] [2025-01-02 02:05:31,025] [pool-1-thread-9] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:05:31,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:05:31,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:31,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-02_02-05-31.log] [testng] 02:05:31,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d6a7842 - End of configuration. [testng] [2025-01-02 02:05:32,013] [pool-1-thread-8] Initializing /data/jae/20xD_5minfor14h.avi: [testng] 02:05:32,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:05:32,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:32,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-02_02-05-32.log] [testng] 02:05:32,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38bebe49 - End of configuration. [testng] [2025-01-02 02:05:32,427] [pool-1-thread-7] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 02:05:32,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:05:32,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:32,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-02_02-05-32.log] [testng] 02:05:32,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31baf4ff - End of configuration. [testng] [2025-01-02 02:05:32,675] [pool-1-thread-6] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 02:05:32,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:05:32,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:32,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-02_02-05-32.log] [testng] 02:05:32,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bbec356 - End of configuration. [testng] [2025-01-02 02:05:32,977] [pool-1-thread-5] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] 02:05:32,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:05:32,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:32,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-02_02-05-32.log] [testng] 02:05:32,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71aad2f4 - End of configuration. [testng] [2025-01-02 02:05:33,251] [pool-1-thread-4] Initializing /data/ascb/TIRF.avi: [testng] 02:05:33,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:05:33,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:33,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-02_02-05-33.log] [testng] 02:05:33,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27b12be1 - End of configuration. [testng] [2025-01-02 02:05:33,738] [pool-1-thread-3] Initializing /data/kurt/63x_6um.avi: [testng] 02:05:33,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:05:33,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:33,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-02_02-05-33.log] [testng] 02:05:33,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d7e4bb4 - End of configuration. [testng] [2025-01-02 02:05:34,070] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 02:05:34,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:05:34,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-02_02-05-34.log] [testng] 02:05:34,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fb387df - End of configuration. [testng] [2025-01-02 02:05:37,880] [pool-1-thread-1] Initializing /data/simon/24_bit_problem.avi: [testng] [2025-01-02 02:05:38,454] [pool-1-thread-10] Initializing /data/chris/APZ04_009.avi: [testng] [2025-01-02 02:05:40,001] [pool-1-thread-11] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2025-01-02 02:05:40,319] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] [2025-01-02 02:05:40,753] [pool-1-thread-9] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2025-01-02 02:05:40,993] [pool-1-thread-2] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2025-01-02 02:05:41,397] [pool-1-thread-4] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2025-01-02 02:05:41,643] [pool-1-thread-3] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2025-01-02 02:05:41,898] [pool-1-thread-6] Initializing /data/william/worm.avi: [testng] [2025-01-02 02:05:42,140] [pool-1-thread-12] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2025-01-02 02:05:42,647] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2025-01-02 02:05:43,379] [pool-1-thread-8] Initializing /data/kurt/40x_6um_2.avi: [testng] [2025-01-02 02:05:46,582] [pool-1-thread-6] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2025-01-02 02:05:47,029] [pool-1-thread-1] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2025-01-02 02:05:47,352] [pool-1-thread-9] Initializing /data/kurt/40x_6um.avi: [testng] [2025-01-02 02:05:47,639] [pool-1-thread-5] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2025-01-02 02:05:47,972] [pool-1-thread-4] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2025-01-02 02:05:48,271] [pool-1-thread-7] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2025-01-02 02:05:48,536] [pool-1-thread-11] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2025-01-02 02:05:48,791] [pool-1-thread-3] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2025-01-02 02:05:49,093] [pool-1-thread-2] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2025-01-02 02:05:50,570] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2025-01-02 02:05:53,742] [pool-1-thread-12] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2025-01-02 02:05:54,015] [pool-1-thread-7] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2025-01-02 02:05:54,338] [pool-1-thread-1] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2025-01-02 02:05:54,658] [pool-1-thread-3] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 31 seconds Finished: SUCCESS