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Started by upstream project "BIOFORMATS-test-repo" build number 306 originally caused by: Started by upstream project "Trigger" build number 328 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins1155580729574867731.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48544_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:44:18,705 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:44:18,706 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 04:44:18,706 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:44:18,707 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:44:18,708 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:44:18,708 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:44:18,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:44:18,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:44:18,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:44:18,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:44:18,710 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:44:18,710 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:44:18,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:44:18,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:44:18,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:44:18,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:44:18,887 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:44:18,887 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:44:18,887 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:44:18,887 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:44:18,887 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 04:44:18,888 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 04:44:18,888 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-02 04:44:18,897] [main] java.version = 21 [testng] 04:44:18,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:44:18,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:44:18,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-02_04-44-18.log] [testng] 04:44:18,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2025-01-02 04:44:18,941] [main] testng.directory = /data [testng] [2025-01-02 04:44:18,941] [main] testng.configDirectory = /config [testng] [2025-01-02 04:44:18,949] [main] testng.multiplier = 1.0 [testng] [2025-01-02 04:44:18,950] [main] testng.in-memory = false [testng] [2025-01-02 04:44:18,950] [main] testng.allow-missing = false [testng] [2025-01-02 04:44:18,950] [main] user.language = en [testng] [2025-01-02 04:44:18,950] [main] user.country = ${user.country} [testng] [2025-01-02 04:44:18,950] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-01-02 04:44:38,441] [main] ---------------------------------------- [testng] [2025-01-02 04:44:38,441] [main] Total files: 31 [testng] [2025-01-02 04:44:38,441] [main] Scan time: 19.491 s (628 ms/file) [testng] [2025-01-02 04:44:38,442] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-02 04:45:02,878] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 04:45:02,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:45:02,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:02,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-02_04-45-02.log] [testng] 04:45:02,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@327ab7ab - End of configuration. [testng] [2025-01-02 04:45:03,768] [pool-1-thread-12] Initializing /data/david/cy5-tph.jp2: [testng] 04:45:03,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:45:03,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:03,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-02_04-45-03.log] [testng] 04:45:03,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40b58016 - End of configuration. [testng] [2025-01-02 04:45:04,298] [pool-1-thread-11] Initializing /data/misc/clown-rgb.jp2: [testng] 04:45:04,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:45:04,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:04,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-02_04-45-04.log] [testng] 04:45:04,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b5b9bf6 - End of configuration. [testng] [2025-01-02 04:45:04,838] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 04:45:04,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:45:04,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:04,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-02_04-45-04.log] [testng] 04:45:04,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aaf5309 - End of configuration. [testng] [2025-01-02 04:45:05,357] [pool-1-thread-9] Initializing /data/venu/Multichannel 3a.jpg: [testng] 04:45:05,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:45:05,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:05,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-02_04-45-05.log] [testng] 04:45:05,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e071a9c - End of configuration. [testng] [2025-01-02 04:45:05,499] [pool-1-thread-8] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 04:45:05,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:45:05,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:05,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-02_04-45-05.log] [testng] 04:45:05,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@212f53c5 - End of configuration. [testng] [2025-01-02 04:45:05,930] [pool-1-thread-7] Initializing /data/vikram/Captured 4.jp2: [testng] 04:45:05,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:45:05,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:05,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-02_04-45-05.log] [testng] 04:45:05,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@379eb37a - End of configuration. [testng] [2025-01-02 04:45:06,452] [pool-1-thread-6] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 04:45:06,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:45:06,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:06,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-02_04-45-06.log] [testng] 04:45:06,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e08c1f - End of configuration. [testng] [2025-01-02 04:45:07,493] [pool-1-thread-5] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 04:45:07,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:45:07,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:07,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-02_04-45-07.log] [testng] 04:45:07,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ded394 - End of configuration. [testng] [2025-01-02 04:45:07,933] [pool-1-thread-4] Initializing /data/david/C1R1_FOS.jp2: [testng] 04:45:07,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:45:07,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:07,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-02_04-45-07.log] [testng] 04:45:07,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49b1a7aa - End of configuration. [testng] [2025-01-02 04:45:08,351] [pool-1-thread-3] Initializing /data/kraig/head.jp2: [testng] 04:45:08,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:45:08,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:08,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-02_04-45-08.log] [testng] 04:45:08,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40e95823 - End of configuration. [testng] [2025-01-02 04:45:08,893] [pool-1-thread-2] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 04:45:08,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:45:08,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:45:08,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-02_04-45-08.log] [testng] 04:45:08,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@386d7a6e - End of configuration. [testng] [2025-01-02 04:45:13,363] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2025-01-02 04:45:14,902] [pool-1-thread-11] Initializing /data/vikram/Captured 2.jp2: [testng] [2025-01-02 04:45:15,517] [pool-1-thread-3] Initializing /data/big-images/2kx2k.jpf: [testng] [2025-01-02 04:45:16,022] [pool-1-thread-7] Initializing /data/vikram/Captured 1.jp2: [testng] [2025-01-02 04:45:18,997] [pool-1-thread-6] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2025-01-02 04:45:19,646] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-01-02 04:45:21,617] [pool-1-thread-8] Initializing /data/david/multichannel-2d test.jp2: [testng] [2025-01-02 04:45:22,784] [pool-1-thread-7] Initializing /data/vikram/Captured 3.jp2: [testng] [2025-01-02 04:45:23,322] [pool-1-thread-11] Initializing /data/vikram/Captured 5.jp2: [testng] [2025-01-02 04:45:25,473] [pool-1-thread-9] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-01-02 04:45:26,901] [pool-1-thread-5] Initializing /data/venu/Multichannel 3.jp2: [testng] [2025-01-02 04:45:30,459] [pool-1-thread-7] Initializing /data/aryeh/flour 12.jp2: [testng] [2025-01-02 04:45:31,143] [pool-1-thread-10] Initializing /data/frans/flower.jp2: [testng] [2025-01-02 04:45:31,802] [pool-1-thread-11] Initializing /data/misc/clown-rgb.jpc: [testng] [2025-01-02 04:45:33,187] [pool-1-thread-3] Initializing /data/david/000000_000001.jpx: [testng] [2025-01-02 04:45:36,200] [pool-1-thread-11] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-01-02 04:45:38,129] [pool-1-thread-7] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2025-01-02 04:45:39,445] [pool-1-thread-6] Initializing /data/big-images/8kx8k.jpf: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 54 seconds Finished: SUCCESS