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Started by upstream project "BIOFORMATS-test-repo" build number 307 originally caused by: Started by upstream project "Trigger" build number 329 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10343750048558409728.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48591_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:41:28,155 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:41:28,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:41:28,157 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:41:28,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:41:28,158 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:41:28,158 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:41:28,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:41:28,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:41:28,159 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:41:28,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:41:28,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:41:28,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:41:28,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:41:28,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:41:28,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:41:28,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:41:28,434 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:41:28,434 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:41:28,434 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:41:28,434 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:41:28,435 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:41:28,436 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:41:28,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-03 00:41:28,447] [main] java.version = 1.8.0_342 [testng] 00:41:28,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:41:28,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:28,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-03_00-41-28.log] [testng] 00:41:28,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2025-01-03 00:41:28,503] [main] testng.directory = /data [testng] [2025-01-03 00:41:28,503] [main] testng.configDirectory = /config [testng] [2025-01-03 00:41:28,515] [main] testng.multiplier = 1.0 [testng] [2025-01-03 00:41:28,515] [main] testng.in-memory = false [testng] [2025-01-03 00:41:28,515] [main] testng.allow-missing = false [testng] [2025-01-03 00:41:28,515] [main] user.language = en [testng] [2025-01-03 00:41:28,515] [main] user.country = ${user.country} [testng] [2025-01-03 00:41:28,516] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-01-03 00:41:29,036] [main] ---------------------------------------- [testng] [2025-01-03 00:41:29,036] [main] Total files: 21 [testng] [2025-01-03 00:41:29,036] [main] Scan time: 0.52 s (24 ms/file) [testng] [2025-01-03 00:41:29,036] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-03 00:41:32,657] [pool-1-thread-1] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:41:32,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:41:32,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:32,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-03_00-41-32.log] [testng] 00:41:32,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39ee15f5 - End of configuration. [testng] [2025-01-03 00:41:32,767] [pool-1-thread-12] Initializing /data/samples/CTC16.TGA: [testng] 00:41:32,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:41:32,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:32,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-03_00-41-32.log] [testng] 00:41:32,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1834cdfb - End of configuration. [testng] [2025-01-03 00:41:32,897] [pool-1-thread-11] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:41:32,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:41:32,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:32,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-03_00-41-32.log] [testng] 00:41:32,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e683b4 - End of configuration. [testng] [2025-01-03 00:41:33,004] [pool-1-thread-10] Initializing /data/samples/UTC32.TGA: [testng] 00:41:33,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:41:33,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:33,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-03_00-41-33.log] [testng] 00:41:33,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c28c901 - End of configuration. [testng] [2025-01-03 00:41:33,185] [pool-1-thread-9] Initializing /data/samples/CBW8.TGA: [testng] 00:41:33,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:41:33,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:33,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-03_00-41-33.log] [testng] 00:41:33,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e67bdd0 - End of configuration. [testng] [2025-01-03 00:41:33,345] [pool-1-thread-8] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:41:33,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:41:33,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:33,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-03_00-41-33.log] [testng] 00:41:33,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a7c1a9 - End of configuration. [testng] [2025-01-03 00:41:33,447] [pool-1-thread-7] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:41:33,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:41:33,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:33,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-03_00-41-33.log] [testng] 00:41:33,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62961138 - End of configuration. [testng] [2025-01-03 00:41:33,575] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] 00:41:33,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:41:33,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:33,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-03_00-41-33.log] [testng] 00:41:33,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35041726 - End of configuration. [testng] [2025-01-03 00:41:33,780] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA: [testng] 00:41:33,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:41:33,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:33,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-03_00-41-33.log] [testng] 00:41:33,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59149c41 - End of configuration. [testng] [2025-01-03 00:41:33,994] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA: [testng] 00:41:33,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:41:33,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:33,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-03_00-41-33.log] [testng] 00:41:33,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@425e85f3 - End of configuration. [testng] [2025-01-03 00:41:34,169] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] 00:41:34,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:41:34,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:34,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-03_00-41-34.log] [testng] 00:41:34,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a4a49ba - End of configuration. [testng] [2025-01-03 00:41:34,355] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 00:41:34,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:41:34,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:41:34,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-03_00-41-34.log] [testng] 00:41:34,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a1fc117 - End of configuration. [testng] [2025-01-03 00:41:37,118] [pool-1-thread-9] Initializing /data/samples/CCM8.TGA: [testng] [2025-01-03 00:41:37,334] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] [2025-01-03 00:41:37,560] [pool-1-thread-1] Initializing /data/samples/UTC24.TGA: [testng] [2025-01-03 00:41:37,750] [pool-1-thread-12] Initializing /data/samples/UTC16.TGA: [testng] [2025-01-03 00:41:37,948] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] [2025-01-03 00:41:38,105] [pool-1-thread-4] Initializing /data/samples/UBW8.TGA: [testng] [2025-01-03 00:41:38,257] [pool-1-thread-6] Initializing /data/samples/MARBLES.TGA: [testng] [2025-01-03 00:41:38,434] [pool-1-thread-5] Initializing /data/samples/FLAG_B24.TGA: [testng] [2025-01-03 00:41:38,518] [pool-1-thread-2] Initializing /data/samples/UCM8.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 15 seconds Finished: SUCCESS