Started by upstream project "BIOFORMATS-test-repo" build number 307 originally caused by: Started by upstream project "Trigger" build number 329 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins1092904099193091913.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_48682_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:18:04,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:18:04,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:18:04,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:18:04,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:18:04,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:18:04,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:18:04,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:18:04,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:18:04,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:18:04,819 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:18:04,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:18:04,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:18:05,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:18:05,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:18:05,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:18:05,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:18:05,080 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:18:05,080 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:18:05,080 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:18:05,081 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:18:05,081 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:18:05,082 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:18:05,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-01-03 03:18:05,092] [main] java.version = 1.8.0_342 [testng] 03:18:05,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:18:05,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:18:05,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-03_03-18-05.log] [testng] 03:18:05,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2025-01-03 03:18:05,144] [main] testng.directory = /data [testng] [2025-01-03 03:18:05,144] [main] testng.configDirectory = /config [testng] [2025-01-03 03:18:05,156] [main] testng.multiplier = 1.0 [testng] [2025-01-03 03:18:05,157] [main] testng.in-memory = false [testng] [2025-01-03 03:18:05,157] [main] testng.allow-missing = false [testng] [2025-01-03 03:18:05,157] [main] user.language = en [testng] [2025-01-03 03:18:05,157] [main] user.country = ${user.country} [testng] [2025-01-03 03:18:05,157] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-01-03 03:19:57,865] [main] ---------------------------------------- [testng] [2025-01-03 03:19:57,865] [main] Total files: 15735 [testng] [2025-01-03 03:19:57,865] [main] Scan time: 112.708 s (7 ms/file) [testng] [2025-01-03 03:19:57,866] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-01-03 03:22:34,712] [pool-1-thread-1] Initializing /data/converted/converted/damian-compressed.tif: [testng] 03:22:34,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:22:34,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:34,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-01-03_03-22-34.log] [testng] 03:22:34,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ddc8754 - End of configuration. [testng] [2025-01-03 03:22:35,749] [pool-1-thread-12] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] 03:22:35,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:22:35,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:35,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-01-03_03-22-35.log] [testng] 03:22:35,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cdeea6a - End of configuration. [testng] [2025-01-03 03:22:37,453] [pool-1-thread-11] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] 03:22:37,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:22:37,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:37,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-01-03_03-22-37.log] [testng] 03:22:37,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6085b3a1 - End of configuration. [testng] [2025-01-03 03:22:39,094] [pool-1-thread-10] Initializing /data/converted/karsten/Bild1.tif: [testng] 03:22:39,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:22:39,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:39,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-01-03_03-22-39.log] [testng] 03:22:39,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31e75c28 - End of configuration. [testng] [2025-01-03 03:22:39,713] [pool-1-thread-9] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 03:22:39,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:22:39,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:39,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-01-03_03-22-39.log] [testng] 03:22:39,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2740e03d - End of configuration. [testng] [2025-01-03 03:22:40,329] [pool-1-thread-8] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] 03:22:40,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:22:40,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:40,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-01-03_03-22-40.log] [testng] 03:22:40,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b6f1040 - End of configuration. [testng] [2025-01-03 03:22:41,660] [pool-1-thread-7] Initializing /data/converted/darren/section0002_w1.tif: [testng] 03:22:41,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:22:41,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:41,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-01-03_03-22-41.log] [testng] 03:22:41,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eabecf5 - End of configuration. [testng] [2025-01-03 03:22:42,888] [pool-1-thread-6] Initializing /data/scott/Slide133-04.tif: [testng] 03:22:42,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:22:42,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:42,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-01-03_03-22-42.log] [testng] 03:22:42,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25a24044 - End of configuration. [testng] [2025-01-03 03:22:44,119] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] 03:22:44,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:22:44,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:44,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-01-03_03-22-44.log] [testng] 03:22:44,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9d477cd - End of configuration. [testng] [2025-01-03 03:22:45,361] [pool-1-thread-4] Initializing /data/converted/lior/live+cf5b.tif: [testng] 03:22:45,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:22:45,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:45,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-01-03_03-22-45.log] [testng] 03:22:45,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38f0a27e - End of configuration. [testng] [2025-01-03 03:22:46,112] [pool-1-thread-3] Initializing /data/converted/karsten/Bild2.tif: [testng] 03:22:46,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:22:46,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:46,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-01-03_03-22-46.log] [testng] 03:22:46,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d5cf79a - End of configuration. [testng] [2025-01-03 03:22:46,969] [pool-1-thread-2] Initializing /data/converted/converted/2chz.tif: [testng] 03:22:46,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:22:46,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:46,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-03_03-22-46.log] [testng] 03:22:46,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678b4ea3 - End of configuration. [testng] [2025-01-03 03:23:06,365] [pool-1-thread-1] Initializing /data/converted/converted/2chzt.tif: [testng] [2025-01-03 03:23:11,154] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2025-01-03 03:23:11,877] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2025-01-03 03:23:12,814] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2025-01-03 03:23:16,649] [pool-1-thread-3] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2025-01-03 03:23:17,758] [pool-1-thread-10] Initializing /data/converted/dan/adultnr1.tif: [testng] [2025-01-03 03:23:26,392] [pool-1-thread-4] Initializing /data/converted/michel/d.tif: [testng] [2025-01-03 03:23:27,611] [pool-1-thread-8] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2025-01-03 03:23:33,590] [pool-1-thread-11] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2025-01-03 03:23:50,974] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2025-01-03 03:24:11,297] [pool-1-thread-4] Initializing /data/scott/Slide133-01.tif: [testng] [2025-01-03 03:24:12,606] [pool-1-thread-10] Initializing /data/converted/othmar/z-stack.tif: [testng] [2025-01-03 03:24:32,152] [pool-1-thread-4] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2025-01-03 03:24:48,668] [pool-1-thread-4] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2025-01-03 03:24:59,581] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2025-01-03 03:25:12,686] [pool-1-thread-4] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2025-01-03 03:25:20,185] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2025-01-03 03:25:35,085] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2025-01-03 03:26:12,134] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2025-01-03 03:29:14,148] [pool-1-thread-2] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2025-01-03 03:29:26,345] [pool-1-thread-5] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2025-01-03 03:29:46,181] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2025-01-03 03:29:50,767] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2025-01-03 03:29:53,611] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2025-01-03 03:30:02,719] [pool-1-thread-6] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2025-01-03 03:31:43,484] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2025-01-03 03:32:00,871] [pool-1-thread-6] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2025-01-03 03:32:23,964] [pool-1-thread-3] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2025-01-03 03:32:33,037] [pool-1-thread-6] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2025-01-03 03:32:46,167] [pool-1-thread-5] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2025-01-03 03:33:14,655] [pool-1-thread-5] Initializing /data/converted/stephan/notok2.tif: [testng] [2025-01-03 03:33:28,346] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2025-01-03 03:34:53,265] [pool-1-thread-5] Initializing /data/converted/converted/damian.tif: [testng] [2025-01-03 03:35:13,069] [pool-1-thread-5] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2025-01-03 03:37:07,686] [pool-1-thread-5] Initializing /data/converted/converted/mri-stack.tif: [testng] [2025-01-03 03:37:17,060] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2025-01-03 03:37:31,321] [pool-1-thread-5] Initializing /data/scott/Slide133-08.tif: [testng] [2025-01-03 03:37:39,719] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2025-01-03 03:38:00,023] [pool-1-thread-5] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2025-01-03 03:38:07,353] [pool-1-thread-12] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2025-01-03 03:38:12,550] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2025-01-03 03:38:27,234] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2025-01-03 03:39:50,614] [pool-1-thread-5] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2025-01-03 03:40:41,052] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2025-01-03 03:41:07,119] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2025-01-03 03:41:12,318] [pool-1-thread-3] Initializing /data/converted/michel/c.tif: [testng] [2025-01-03 03:41:47,008] [pool-1-thread-3] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2025-01-03 03:42:06,923] [pool-1-thread-10] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2025-01-03 03:42:19,628] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2025-01-03 03:43:19,425] [pool-1-thread-9] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2025-01-03 03:43:28,465] [pool-1-thread-5] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2025-01-03 03:44:58,637] [pool-1-thread-12] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2025-01-03 03:45:19,763] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2025-01-03 03:45:31,885] [pool-1-thread-11] Initializing /data/converted/dietmar/138.tif: [testng] [2025-01-03 03:45:39,832] [pool-1-thread-12] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2025-01-03 03:46:06,243] [pool-1-thread-12] Initializing /data/converted/sebastien/test.tif: [testng] [2025-01-03 03:47:43,788] [pool-1-thread-8] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2025-01-03 03:48:06,969] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2025-01-03 03:49:44,480] [pool-1-thread-3] Initializing /data/converted/dietmar/137.tif: [testng] [2025-01-03 03:49:57,667] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2025-01-03 03:50:43,985] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2025-01-03 03:50:50,482] [pool-1-thread-4] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2025-01-03 03:52:16,201] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2025-01-03 03:52:35,398] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2025-01-03 03:52:58,435] [pool-1-thread-7] Initializing /data/converted/othmar/mozaic.tif: [testng] [2025-01-03 03:53:37,037] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2025-01-03 03:54:24,614] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2025-01-03 03:57:42,909] [pool-1-thread-7] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2025-01-03 03:58:06,793] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] [2025-01-03 03:58:20,056] [pool-1-thread-7] Initializing /data/converted/michel/e.tif: [testng] [2025-01-03 03:58:32,646] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2025-01-03 03:58:47,814] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2025-01-03 03:59:28,372] [pool-1-thread-7] Initializing /data/scott/Slide133-11.tif: [testng] [2025-01-03 04:00:01,686] [pool-1-thread-7] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2025-01-03 04:00:29,272] [pool-1-thread-7] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2025-01-03 04:01:06,879] [pool-1-thread-7] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2025-01-03 04:01:09,448] [pool-1-thread-11] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2025-01-03 04:01:38,164] [pool-1-thread-11] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2025-01-03 04:02:12,869] [pool-1-thread-4] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2025-01-03 04:02:36,594] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2025-01-03 04:02:48,092] [pool-1-thread-8] Initializing /data/converted/nicolas/image.tif: [testng] [2025-01-03 04:03:16,977] [pool-1-thread-8] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2025-01-03 04:03:47,990] [pool-1-thread-12] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2025-01-03 04:03:51,849] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2025-01-03 04:04:31,615] [pool-1-thread-12] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2025-01-03 04:04:53,179] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2025-01-03 04:05:08,836] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2025-01-03 04:05:27,263] [pool-1-thread-7] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2025-01-03 04:06:06,897] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2025-01-03 04:06:49,812] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2025-01-03 04:07:31,937] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2025-01-03 04:08:05,240] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2025-01-03 04:08:18,449] [pool-1-thread-10] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2025-01-03 04:08:21,648] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2025-01-03 04:08:27,239] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2025-01-03 04:09:08,853] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2025-01-03 04:12:50,308] [pool-1-thread-5] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2025-01-03 04:13:44,881] [pool-1-thread-8] Initializing /data/converted/michel/a.tif: [testng] [2025-01-03 04:14:14,255] [pool-1-thread-8] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2025-01-03 04:14:22,492] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2025-01-03 04:14:33,911] [pool-1-thread-1] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2025-01-03 04:14:55,631] [pool-1-thread-8] Initializing /data/converted/vladan/vladan.tif: [testng] [2025-01-03 04:15:16,716] [pool-1-thread-4] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2025-01-03 04:16:37,844] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2025-01-03 04:16:41,937] [pool-1-thread-11] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2025-01-03 04:16:52,399] [pool-1-thread-10] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2025-01-03 04:19:09,809] [pool-1-thread-11] Initializing /data/converted/sebastien/F1.tif: [testng] [2025-01-03 04:19:32,000] [pool-1-thread-7] Initializing /data/othmar/mozaic.tif: [testng] [2025-01-03 04:20:13,619] [pool-1-thread-9] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2025-01-03 04:20:36,966] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2025-01-03 04:20:49,894] [pool-1-thread-8] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2025-01-03 04:21:02,817] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2025-01-03 04:21:18,130] [pool-1-thread-12] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 04:54:47,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:54:47,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:54:47,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-01-03_04-54-47.log] [testng] 04:54:47,917 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3418e888 - End of configuration. [testng] 04:57:29,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:57:29,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:57:29,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-01-03_04-57-29.log] [testng] 04:57:29,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b93d874 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 99 minutes 29 seconds Finished: SUCCESS